Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 547,879 2 bp→GA coding (595‑596/630 nt) h16_A0522 ← conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM260479547,8790AG100.0% 51.4 / NA 15L199S (CTC→TCC) h16_A0522conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (8/7);  total (8/7)
*AM260479547,8800GA100.0% 50.2 / NA 15L199S (CTC→TCC) h16_A0522conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (8/7);  total (8/7)

GCAGCGAGTCGGTCATGGGTTGCGACATGAATCGTATCAACAGGTTGTAGCGCGCGCCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGAGCAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGCAGCGTGGTGTAGGCGCATTGCGCGGCCGCCGCGGCGCTGGCCGCGCCGTTGCTGCCGCCGCGGCTGCCTGCAGCCGGGAAGCGTGCGTC  >  AM260479/547781‑548003
                                                                                                   ||                                                                                                                           
gcagcGAGTCGGTCATGGGTTGCGACATGAATCGTATCCAACAGGTTGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGc                                                                                           <  2:425541/134‑1 (MQ=255)
      aGTCGGTCATGGGTTGCGACATGAATCGTATCCAACAGGTTGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGCa                                                                                          <  2:649999/129‑1 (MQ=255)
      aGTCGGTCATGGGTTGCGACATGAATCGTATCCAACAGGTTGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGCa                                                                                          >  1:649999/1‑129 (MQ=255)
                 ggTTGCGACATGAATCGTATCCAACAGGTTGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGcc                                                                                                   >  1:1105483/1‑109 (MQ=255)
                 ggTTGCGACATGAATCGTATCCAACAGGTTGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGcc                                                                                                   <  2:1105483/109‑1 (MQ=255)
                          aTGAATCGTATCCAACAGGTTGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGc                                                                                           <  1:57085/108‑1 (MQ=255)
                          aTGAATCGTATCCAACAGGTTGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGc                                                                                           >  2:57085/1‑108 (MQ=255)
                                       aaCAGGTTGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGCAGCGTGGTGTAGGCGCATTGCGCGGCCGCCGCGGCGCTg                                                    >  1:952378/1‑134 (MQ=255)
                                             ttGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGgacagcag                                                                                                                       <  2:98877/61‑1 (MQ=255)
                                             ttGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGgacagcag                                                                                                                       >  1:98877/1‑61 (MQ=255)
                                             ttGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTg                                                                                                     >  1:739146/1‑79 (MQ=255)
                                             ttGTAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTg                                                                                                     <  2:739146/79‑1 (MQ=255)
                                                tAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGCa                                                                                          <  2:1114487/87‑1 (MQ=255)
                                                tAGCGCGCGCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGCa                                                                                          >  1:1114487/1‑87 (MQ=255)
                                                            gCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGCAGCGTGGTGTAGGCGCATTGCGCGGCCGCCGCGGCGCTGGCCGCGCCGTTGCTgccgcc                                >  2:328972/1‑134 (MQ=255)
                                                                            gcgAAAGATTAGGTTCCACTCCGGACAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGCAGCGTGGTGTAGGCGCATTGCGCGGCCGCCGCGGCGCTGGCCGCGCCGTTGCTGCCGCCGCGGCTGCCTGCAGcc                >  1:430815/1‑134 (MQ=255)
                                                                                           ccACTCCGGACAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGCAGCGTGGTGTAGGCGCATTGCGCGGCCGCCGCGGCGCTGGCCGCGCCGTTGCTGCCGCCGCGGCTGCCTGCAGCCGGGAAGCGTGCGTc  <  2:550520/133‑1 (MQ=255)
                                                                                                   ||                                                                                                                           
GCAGCGAGTCGGTCATGGGTTGCGACATGAATCGTATCAACAGGTTGTAGCGCGCGCCCGCTTGTCAGCAGCGCGGCGAAAGATTAGGTTCCACTCCGAGCAGCAGCCACAGGCCGTTCTGTTGCCGGAATTGCAGCGTGGTGTAGGCGCATTGCGCGGCCGCCGCGGCGCTGGCCGCGCCGTTGCTGCCGCCGCGGCTGCCTGCAGCCGGGAAGCGTGCGTC  >  AM260479/547781‑548003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: