| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 159,885 | Δ1 bp | coding (149/939 nt) | h16_A0146 → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 159,883 | 0 | G | . | 100.0% | 52.0 / NA | 13 | coding (147/939 nt) | h16_A0146 | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (7/6); total (7/6) | |||||||||||
CCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCCGGGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGTCGGGCAGTGGCGGCGAGGGCAGCGCGGCCAGGCCTGCCGCCGCTGCCGCGCCGTCC > AM260479/159847‑160010 | ggcgcgcccgcAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGTCGGGCAGTGGCGGCGAGGGCAGCGCgg > 1:876562/3‑134 (MQ=255) cgcgcccgcAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGt < 1:318016/105‑1 (MQ=255) cgcgcccgcAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGt > 2:318016/1‑105 (MQ=255) ccgcAGCCCAGGGCGGCCGCGCCGGCCCC‑GGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGTCGGGCAGTGGCGGCGAGGGCAGCGCGGCCAGGcc > 2:727289/1‑134 (MQ=255) ccAGGGCGGCCGCGCCGGCCCC‑GGAACCCGcgccgc > 1:349292/1‑36 (MQ=37) ccAGGGCGGCCGCGCCGGCCCC‑GGAACCCGcgccgc < 2:349292/36‑1 (MQ=37) ccAGGGCGGCCGCGCCGGCCCC‑GGAACCCGCGCCGCAGGAAGcccccgct > 1:223934/1‑50 (MQ=39) ccAGGGCGGCCGCGCCGGCCCC‑GGAACCCGCGCCGCAGGAAGcccccgct < 2:223934/50‑1 (MQ=39) gcgcCGGCCCC‑GGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGTCGGGCAGTGGCGGCGAGGGCAGCGCGGCCAGGCCTGCCGCCGCTGcccgacg < 1:727289/134‑6 (MQ=255) gcCGGCCCC‑GGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGAcc > 1:776960/1‑70 (MQ=255) gcCGGCCCC‑GGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGAcc < 2:776960/70‑1 (MQ=255) gcCGGCCCC‑GGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGTCGGGCAGTGGCGGCGAGGGCAGCGCGGCCAGGCCTGCCGCCGCTGCCGCGCCGt > 2:905869/1‑134 (MQ=255) cGGCCCC‑GGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGTCGGGCAGTGGCGGCGAGGGCAGCGCGGCCAGGCCTGCCGCCGCTGCCGCGCCGTcc < 2:332436/134‑1 (MQ=255) | CCCGCGCCCGCAGCCCAGGGCGGCCGCGCCGGCCCCGGGAACCCGCGCCGCAGGAAGCCCCCGCTCCCCCGCTCGCCACCAGCCCGCAGGGCGCGACCGAGATGGCGTCGGGCAGTGGCGGCGAGGGCAGCGCGGCCAGGCCTGCCGCCGCTGCCGCGCCGTCC > AM260479/159847‑160010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |