Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 1,191,426 Δ1 bp coding (350/390 nt) h16_A1095 ← Hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604791,191,4240G.100.0% 58.9 / NA 14coding (352/390 nt)h16_A1095Hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (7/7);  total (7/7)

CAGCGGCCGGGGCGGACACCTGTTCAGGCGCCGACGCCGGCAGCAGTGCGCCATCATCGATCTGCCGCAGCACGATGCTGGTGGTCAGCCCGGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCCGCGCGCGCGCGGCGCGCGCTGCCATGGATTGCGTTGCGGTCCCTGTGGCCCGTGGTGTTGCCGCCTCAGCTG  >  AM260479/1191333‑1191546
                                                                                           |                                                                                                                          
cAGCGGCCGGGGCGGACACCTGTTCAGGCGCCGACGCCGGCAGCAGTGCGCCATCATCGATCTGCCGCAGCACGATGCTGGTGGTCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGccac                                                                                 >  2:1077738/1‑134 (MQ=255)
        ggggCGGACACCTGTTCAGGCGCCGACGCCGGCAGCAGTGCGCCATCATCGATCTGCCGCAGCACGATGCTGGTGGTCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCAccgccg                                                                         <  2:524273/134‑1 (MQ=255)
                      ttCAGGCGCCGACGCCGGCAGCAGTGCGCCATCATCGATCTGCCGCAGCACGATGCTGGTGGTCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCCGCGCgcgcgcggcg                                                            <  2:341171/133‑1 (MQ=255)
                                        cagcagTGCGCCATCATCGATCTGCCGCAGCACGATGCTGGTGGTCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCCGCGCGCGCGCGGCGCGCGCTGCCATGGAttgcg                                         <  1:1158088/134‑1 (MQ=255)
                                                            tCTGCCGCAGCACGATGCTGGTGGTCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCcga                                                                                            <  1:110397/63‑1 (MQ=255)
                                                            tCTGCCGCAGCACGATGCTGGTGGTCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCcga                                                                                            >  2:110397/1‑63 (MQ=255)
                                                                   cagcaCGATGCTGGTGGTCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCCGCGCGCGCGCGGCGCGCGCTGCCATGGATTGCGTTGCGGTCCCTGTGGCCCGTGGTGTTg              >  2:202111/1‑134 (MQ=255)
                                                                    agatcGATGATGGTGGTCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCCGCGCGCGCGCGGCGCGCGCTGCCATGGATTGCGTTGCGGTCCCTGTGGCCCGTGGTGTTgc             >  1:136459/5‑134 (MQ=255)
                                                                        cGATGCTGGTGGTCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCCGCGCGCGCGCGGCGCGCGCTGCCATGGATTGCGTTGCGGTCCCTGTGGCCCGTGGTGTTgccgcc         <  1:1077738/134‑1 (MQ=255)
                                                                              tggtggTCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCCGCGCgcgcgcggcg                                                            >  1:1136525/1‑77 (MQ=255)
                                                                              tggtggTCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCCGCGCgcgcgcggcg                                                            <  2:1136525/77‑1 (MQ=255)
                                                                               ggtggtCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCCGCGCGCGCGCGGCGCGCGCTGCCATGGATTGCGTTGCGGTCCCTGTGGCCCGTGGTGTTGCCGCCTCAGCtg  >  1:353366/1‑134 (MQ=255)
                                                                                    tCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCcgcgcg                                                                     >  1:942644/1‑62 (MQ=255)
                                                                                    tCAGCCCGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCcgcgcg                                                                     <  2:942644/62‑1 (MQ=255)
                                                                                           |                                                                                                                          
CAGCGGCCGGGGCGGACACCTGTTCAGGCGCCGACGCCGGCAGCAGTGCGCCATCATCGATCTGCCGCAGCACGATGCTGGTGGTCAGCCCGGGCCACTGCCGCGACGCTGGCCACTAGCCCGAGCGAGCGCCACCACCGCCGCGCGCGCGCGGCGCGCGCTGCCATGGATTGCGTTGCGGTCCCTGTGGCCCGTGGTGTTGCCGCCTCAGCTG  >  AM260479/1191333‑1191546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: