| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 452,997 | Δ1 bp | intergenic (‑22/+116) | h16_A0432 ← / ← coxF | Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 452,994 | 0 | T | . | 100.0% | 75.8 / NA | 18 | intergenic (‑19/+119) | h16_A0432/coxF | Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (9/9); total (9/9) | |||||||||||
CCCGGACGAATGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCGTTTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACT > AM260479/452887‑453102 | cccGGACGAATGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGcc < 2:816277/134‑1 (MQ=255) ggCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGcc > 2:405454/1‑126 (MQ=255) ggCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGcc < 1:405454/126‑1 (MQ=255) tcgatTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCcagcag > 2:1149531/1‑133 (MQ=255) cGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCgg < 1:1149531/134‑1 (MQ=255) ggCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGt > 2:250702/1‑134 (MQ=255) cAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGaa > 1:858154/1‑96 (MQ=255) cAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGaa < 2:858154/96‑1 (MQ=255) gcgcCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGc < 2:252143/134‑1 (MQ=255) gcgGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTc < 2:1121128/134‑1 (MQ=255) gccgGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATggcgg > 2:622440/1‑134 (MQ=255) cgGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAg > 2:164099/1‑100 (MQ=255) cgGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAg < 1:164099/100‑1 (MQ=255) ggCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACt > 1:301437/1‑134 (MQ=255) gcagcaCCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTc > 1:251028/1‑88 (MQ=255) gcagcaCCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTc < 2:251028/88‑1 (MQ=255) ttgCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTg > 2:1119609/1‑40 (MQ=37) ttgCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTg < 1:1119609/40‑1 (MQ=37) | CCCGGACGAATGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCGTTTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACT > AM260479/452887‑453102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |