Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 3,972,184 +C intergenic (‑136/‑395) h16_A3682 ← / → h16_A3683 putative methyltransferase/Hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604793,972,1821.C100.0% 222.0 / NA 57intergenic (‑134/‑397)h16_A3682/h16_A3683putative methyltransferase/Hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (29/28);  total (29/28)

GTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATG  >  AM260479/3972059‑3972300
                                                                                                                            |                                                                                                                      
gTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc                                                                                                               <  2:17343/134‑1 (MQ=255)
   cTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGa                                                                                                             <  1:16430/133‑1 (MQ=255)
   cTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGa                                                                                                             <  1:703263/133‑1 (MQ=255)
   cTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt                                                                                                            <  1:788308/134‑1 (MQ=255)
                  ccTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACgg                                                                                              >  2:729531/1‑133 (MQ=255)
                            ccGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTc                                                                                   >  1:850711/1‑134 (MQ=255)
                                    ccggccgTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc                                                                                                               <  1:1050352/98‑1 (MQ=255)
                                    ccggccgTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc                                                                                                               >  2:1050352/1‑98 (MQ=255)
                                        ccgTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgc                                                                       >  2:148770/1‑134 (MQ=255)
                                                gcgcGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc                                                                                                               <  2:955846/86‑1 (MQ=255)
                                                gcgcGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc                                                                                                               >  1:955846/1‑86 (MQ=255)
                                                         gggATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAg                                                                           <  2:581103/113‑1 (MQ=255)
                                                         gggATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAg                                                                           >  1:581103/1‑113 (MQ=255)
                                                           gatgatACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTcccc                                                    <  1:148770/134‑1 (MQ=255)
                                                                   cGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGtgtg                                             >  2:757882/1‑133 (MQ=255)
                                                                    ggTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg                                                                      <  2:691661/107‑1 (MQ=255)
                                                                    ggTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg                                                                      >  1:691661/1‑107 (MQ=255)
                                                                     gTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGAt                                          <  1:729531/134‑1 (MQ=255)
                                                                          aCCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt                                                                                                            >  2:873043/1‑63 (MQ=255)
                                                                          aCCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt                                                                                                            <  1:873043/63‑1 (MQ=255)
                                                                            cGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCg                                   >  1:285910/1‑134 (MQ=255)
                                                                             gTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGc                                  <  2:285910/134‑1 (MQ=255)
                                                                                 cacGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCg                              <  2:434323/134‑1 (MQ=255)
                                                                                   cGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACg                                                                                                     >  1:143629/1‑61 (MQ=255)
                                                                                   cGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACg                                                                                                     <  2:143629/61‑1 (MQ=255)
                                                                                         cGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGtt                                                                                                                 >  1:191430/1‑43 (MQ=255)
                                                                                         cGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCCTGGtt                                                                                                                 <  2:191430/43‑1 (MQ=255)
                                                                                                ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc                                                                                                               <  2:687422/38‑1 (MQ=255)
                                                                                                ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc                                                                                                               >  1:687422/1‑38 (MQ=255)
                                                                                                ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGa                                                                                                             <  2:124651/40‑1 (MQ=255)
                                                                                                ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGa                                                                                                             >  1:124651/1‑40 (MQ=255)
                                                                                                ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt                                                                                                            >  1:912282/1‑41 (MQ=255)
                                                                                                ccccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGAt                                                                                                            <  2:912282/41‑1 (MQ=255)
                                                                                                  ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc                                                                                                               <  2:460595/36‑1 (MQ=255)
                                                                                                  ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGc                                                                                                               >  1:460595/1‑36 (MQ=255)
                                                                                                  ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGAt                                          <  2:820024/105‑1 (MQ=255)
                                                                                                  ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGAt                                          >  1:820024/1‑105 (MQ=255)
                                                                                                  ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcg             >  1:507812/1‑134 (MQ=255)
                                                                                                  ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcg             >  2:563808/1‑134 (MQ=255)
                                                                                                  ccTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCAcg             >  2:171241/1‑134 (MQ=255)
                                                                                                   cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGcc                                                                         <  2:37957/73‑1 (MQ=255)
                                                                                                   cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGcc                                                                         >  1:704925/1‑73 (MQ=255)
                                                                                                   cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGcc                                                                         >  1:37957/1‑73 (MQ=255)
                                                                                                   cTTTCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGcc                                                                         <  2:704925/73‑1 (MQ=255)
                                                                                                     ttCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACgg                                                                                              <  1:794697/50‑1 (MQ=255)
                                                                                                     ttCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACgg                                                                                              >  2:794697/1‑50 (MQ=255)
                                                                                                     ttCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACg                                                         <  1:512467/87‑1 (MQ=255)
                                                                                                     ttCCGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACg                                                         >  2:512467/1‑87 (MQ=255)
                                                                                                       ccGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg                                                                      <  2:353349/72‑1 (MQ=255)
                                                                                                       ccGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg                                                                      >  1:353349/1‑72 (MQ=255)
                                                                                                        cGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg                                                                      <  2:1040420/71‑1 (MQ=255)
                                                                                                        cGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCcgcg                                                                      >  1:1040420/1‑71 (MQ=255)
                                                                                                        cGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGAtt       >  2:745586/1‑134 (MQ=255)
                                                                                                        cGGCGACCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGAtt       >  1:984924/1‑134 (MQ=255)
                                                                                                             aCCTCACCGTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGAtg  <  2:850711/134‑1 (MQ=255)
                                                                                                                     gTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACg                                                         <  2:550001/71‑1 (MQ=255)
                                                                                                                     gTATACGCCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACg                                                         >  1:550001/1‑71 (MQ=255)
                                                                                                                            |                                                                                                                      
GTGCTCGTCGCCTGTTTGCCTGAGTGGCCCGCTGTGCCGGCCGTTCCGGCGCGATCGGGGATGATACCGGTGCAACCGTGACACGTATACGTAACACCCCTTTCCGGCGACCTCACCGTATACGCCTGGTTGCGATTGACACGTATACGGCACCCCATTTCCGCCTCAGCCGCGACGCCCGTTTACGTCCCCGCGTGTGGATAACCCCGCCTCGAACTGTGGACAAGCACGCGGATTGGATG  >  AM260479/3972059‑3972300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: