Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260480 153,689 +G intergenic (‑67/+93) h16_B0133 ← / ← h16_B0134 conserved hypothetical protein/outer membrane protein (porin)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM260480153,6871.G93.9% 116.3 / 0.5 33intergenic (‑65/+95)h16_B0133/h16_B0134conserved hypothetical protein/outer membrane protein (porin)
Reads supporting (aligned to +/- strand):  ref base . (1/1);  new base G (13/18);  total (14/19)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.23e-01

GTCGGTGGTGTTGGCCGTGTTCTCGGGCGGGGCGTTGTGGATCGTGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGCCCGCTCGGCGCGGGCATGGCGTCTACGAAAAGTCAGAACTGGTGACGCAGGCCGGCCA  >  AM260480/153560‑153807
                                                                                                                                |                                                                                                                         
gTCGGTGGTGTTGGCCGTGTTCTCGGGCGGGGCGTTGTGGATCGTGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAgggctt                                                                                                                     >  2:760796/1‑130 (MQ=255)
 tCGGTGGTGTTGGCCGTGTTCTCGGGCGGGGCGTTGTGGATCGTGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAgggcttc                                                                                                                    <  1:382297/134‑6 (MQ=255)
    gtggtgTTGGCCGTGTTCTCGGGCGGGGCGTTGTGGATCGTGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCat                                                                                                                  >  1:611080/1‑133 (MQ=255)
      ggtgTTGGCCGTGTTCTCGGGCGGGGCGTTGTGGATCGTGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGGACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCatgaa                                                                                                               >  1:952386/1‑134 (MQ=255)
             gCCGTGTTCTCGGGCGGGGCGTTGTGGATCGTGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAg                                                                                                        <  1:832145/134‑1 (MQ=255)
                                    gtgGATCGTGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCt                                                                                  <  1:239382/133‑1 (MQ=255)
                                           gTGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCaa                                                                          <  2:666206/134‑1 (MQ=255)
                                            tGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAg                                                                                                        >  2:343836/1‑103 (MQ=255)
                                            tGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAg                                                                                                        <  1:343836/103‑1 (MQ=255)
                                            tGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCa                                                                           >  1:1159753/1‑132 (MQ=255)
                                              gTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGACTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAg                                                                        >  1:472822/1‑133 (MQ=255)
                                                cACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTctg                                                                                                  <  2:978169/105‑1 (MQ=255)
                                                cACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTctg                                                                                                  >  1:978169/1‑105 (MQ=255)
                                                     ccACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTTCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGc                                                                 <  2:194666/133‑1 (MQ=255)
                                                     ccACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGc                                                                 <  1:33893/133‑1 (MQ=255)
                                                          cTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCAt                                                                                      >  1:927118/1‑107 (MQ=255)
                                                          cTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCAt                                                                                      <  2:927118/107‑1 (MQ=255)
                                                          cTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGcc                                                           <  2:1159753/134‑1 (MQ=255)
                                                                       cggcATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGCCCGCTCGGCGCggg                                              <  1:800225/134‑1 (MQ=255)
                                                                                 cgcgAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGCCCGCTCGGCGCGGGCATGGCGTCt                                    <  2:952386/134‑1 (MQ=255)
                                                                                       cAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGCCCGCTCGGCGCGGGCATGGCGTCTACGaa                               >  1:304991/1‑133 (MQ=255)
                                                                                        aGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCatgaatg                                                                                                             <  1:946034/54‑1 (MQ=255)
                                                                                        aGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCatgaatg                                                                                                             >  2:946034/1‑54 (MQ=255)
                                                                                                    acCGCACCGTTGGCGTGCGGGCTGTCCAGGACTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGCCCGCTCGGCGCGGGCATGGCGTCTACGAAAAGTCAGAACTGGt                 <  2:472822/134‑1 (MQ=255)
                                                                                                      cGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGCCCGCTCGGCGCGGGCAt                                           <  2:185879/106‑1 (MQ=255)
                                                                                                      cGCACCGTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGCCCGCTCGGCGCGGGCAt                                           >  1:185879/1‑106 (MQ=255)
                                                                                                            gTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGAt                                                                     <  1:566711/74‑1 (MQ=255)
                                                                                                            gTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGAt                                                                     >  2:566711/1‑74 (MQ=255)
                                                                                                            gTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGcc                                                           >  1:1038520/1‑84 (MQ=255)
                                                                                                            gTTGGCGTGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGcc                                                           <  2:1038520/84‑1 (MQ=255)
                                                                                                                   tGCGGGCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGCCCGCTCGGCGCGGGCATGGCGTCTACGAAAAGTCAGAACTGGTGACGCAGGCCGGCCa  <  1:760796/134‑1 (MQ=255)
                                                                                                                       ggCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCa                                                                                       <  2:564866/45‑1 (MQ=38)
                                                                                                                       ggCTGTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCa                                                                                       >  1:564866/1‑45 (MQ=38)
                                                                                                                           gTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCAt                                                                                      <  2:928103/42‑1 (MQ=38)
                                                                                                                           gTCCAGGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCAt                                                                                      >  1:928103/1‑42 (MQ=38)
                                                                                                                                |                                                                                                                         
GTCGGTGGTGTTGGCCGTGTTCTCGGGCGGGGCGTTGTGGATCGTGGTCACTTCCACGCTCACGCCGGCGCCGGCATAGGGCGCGAACAGTTCGCTGACGACCGCACCGTTGGCGTGCGGGCTGTCCAGGCTTCATGAATGACCAGCGTCTGCTGCAGGGCCATGGCTTTCTCCAAAGGATGTGCCATGCCCGCTCGGCGCGGGCATGGCGTCTACGAAAAGTCAGAACTGGTGACGCAGGCCGGCCA  >  AM260480/153560‑153807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: