| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 787,769 | +T | intergenic (‑549/+743) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 787,768 | 1 | . | T | 100.0% | 169.4 / NA | 44 | intergenic (‑548/+744) | h16_A0728/h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (24/20); total (24/20) | |||||||||||
CCAGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTC > AM260479/787652‑787883 | ccAGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa < 1:599364/134‑1 (MQ=255) gACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTg < 2:1095357/134‑1 (MQ=255) ttCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCgg > 2:1024769/1‑134 (MQ=255) ttCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCgg > 1:70273/1‑134 (MQ=255) cccACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcgc > 1:144569/1‑134 (MQ=255) gcgcCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGc < 2:328559/134‑1 (MQ=255) cgcCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGcg < 2:113419/134‑1 (MQ=255) gcCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGcga > 1:1146252/1‑134 (MQ=255) gcCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGcga > 1:651579/1‑134 (MQ=255) aGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTc < 2:732413/108‑1 (MQ=255) aGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTc > 1:732413/1‑108 (MQ=255) tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa < 1:930842/83‑1 (MQ=255) tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa > 2:930842/1‑83 (MQ=255) tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa > 2:54836/1‑83 (MQ=255) tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa < 1:54836/83‑1 (MQ=255) tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcg > 2:1017742/1‑114 (MQ=255) tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcg < 1:515319/114‑1 (MQ=255) tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcg > 2:515319/1‑114 (MQ=255) tCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTcgcg < 1:1017742/114‑1 (MQ=255) aaTCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGc < 1:202051/134‑1 (MQ=255) ccGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGc > 1:1054540/1‑130 (MQ=255) cGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGcc < 2:1054540/130‑1 (MQ=255) tGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGc > 2:1140388/1‑134 (MQ=255) tGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGc > 1:1025536/1‑134 (MQ=255) gtcgtcCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGtt < 1:361003/85‑1 (MQ=255) gtcgtcCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGtt > 2:361003/1‑85 (MQ=255) gtcgtcCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGa > 1:72873/1‑134 (MQ=255) ccTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa > 1:657080/1‑53 (MQ=255) ccTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa < 2:657080/53‑1 (MQ=255) gAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGcc > 1:222347/1‑106 (MQ=255) gAAACTGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGcc < 2:222347/106‑1 (MQ=255) tGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAAc > 1:825104/1‑96 (MQ=255) tGATCTTCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAAc < 2:825104/96‑1 (MQ=255) ttCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa > 1:1123234/1‑40 (MQ=255) ttCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCa < 2:1123234/40‑1 (MQ=255) tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTATTCCTTTGATAACAAAaggaaaaggaaa > 1:968732/1‑134 (MQ=255) tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAaggaaaaggaaa > 1:435413/1‑134 (MQ=255) tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAaggaaaaggaaa > 1:766390/1‑134 (MQ=255) tCGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAaggaaaaggaaa > 2:877942/1‑134 (MQ=255) cGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACg > 2:156408/1‑42 (MQ=255) cGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACg < 1:156408/42‑1 (MQ=255) cGGCGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAaaggaaaaggaa < 2:70273/132‑1 (MQ=255) cGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAAtttt < 2:1146252/134‑2 (MQ=255) cGAACCCGTGCCAGTGTGTTGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAAtttt < 2:1019982/134‑2 (MQ=255) | CCAGCCGATGCGGACCAGTTCCTGCCGCGTGGCCCACGCTTACAGCGCCAGTCCGAATCCCGCCCTGGGATGCGGGGTCGTCCTGAAACTGATCTTCGGCGAACCCGTGCCAGTGTG‑TGCCGCTTCGGTTTCAGACGTCCCCCTGTTCCGGGCTTCTGTTCGCGCGGACATATGTGCGACGAACGTGCCAGATATGGCTAATCCTTTGATAACAAAAGGAAAAGGAAATTTC > AM260479/787652‑787883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |