New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2064164	31 (1.130)	6 (0.240)	6/194	1.5	16.0%	coding (515/909 nt)	h16_A1900	transcriptional regulator, LysR‑family
	?	AM260479	= 2064306	35 (1.410)					coding (657/909 nt)	h16_A1900	transcriptional regulator, LysR‑family
Rejected: Frequency below/above cutoff threshold.

CAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCATGCTGCTGTGCCTGCTGGCCGGGGCCGACCCAGAGCTGGTGCGGCTGGCGCCAGT  >  AM260479/2064175‑2064431                                                                                                                                    |                                                                                                                              cagcTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCcg                                                                                                                             <  1:589159‑M2/134‑3 (MQ=255)   gcTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCcgcc                                                                                                                           <  2:177595‑M2/134‑5 (MQ=255)        gCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCcgccgcgcc                                                                                                                      <  1:854136‑M2/134‑10 (MQ=255)        gCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCcgccgcgcc                                                                                                                      <  2:1064937‑M2/134‑10 (MQ=255)         ccTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCcgccgcgccg                                                                                                                     >  1:995888‑M2/1‑124 (MQ=255)                 cGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGcc                                                                                                             <  1:910059/134‑1 (MQ=255)                            cATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCtggt                                                                                                  <  2:594177/134‑1 (MQ=255)                                   ggCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATg                                                                                           <  1:177595/134‑1 (MQ=255)                                         cGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGAt                                                                                     <  2:854136/134‑1 (MQ=255)                                                gTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGc                                                                              <  2:343017/134‑1 (MQ=255)                                                         tGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCtggt                                                                                                  >  1:603807/1‑105 (MQ=255)                                                         tGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCtggt                                                                                                  <  2:603807/105‑1 (MQ=255)                                                                   gTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGcc                                                                                                      <  1:475722/91‑1 (MQ=255)                                                                   gTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGcc                                                                                                      >  2:475722/1‑91 (MQ=255)                                                                   gTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGAGGATGCCGTGCGGCACGGCATGGGCGCCgg                                                           >  2:605227/1‑134 (MQ=255)                                                                       cGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGcggcacg                                                                        <  2:472361/117‑1 (MQ=255)                                                                       cGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGcggcacg                                                                        >  1:472361/1‑117 (MQ=255)                                                                        ggACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCcgccgcgccgcgtatggtgccgtctgcagccgcccgatacggcggcccaccaggtactccggcggcgcattcg                                                      <  1:900407‑M2/134‑74 (MQ=255)                                                                        ggACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAgcg                                                                                                               >  2:1134923/1‑77 (MQ=255)                                                                        ggACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAgcg                                                                                                               <  1:1134923/77‑1 (MQ=255)                                                                        ggACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGcc                                                             <  1:823099/127‑1 (MQ=255)                                                                        ggACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGcc                                                             >  2:823099/1‑127 (MQ=255)                                                                        ggACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCAtgc                                                      >  1:713306/1‑134 (MQ=255)                                                                        ggACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCAtgc                                                      >  1:667776/1‑134 (MQ=255)                                                                        ggACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCAtgc                                                      >  2:575753/1‑134 (MQ=255)                                                                        ggACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCCGCACGGCATGGGCGCCGGCAtgc                                                      >  1:1005126/1‑134 (MQ=255)                                                                               gcgcTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCATGCTGCtgtg                                               <  2:8862/134‑1 (MQ=255)                                                                                          ccTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCATGCTGCTGTGCCTGCTGGCCg                                    <  2:589159/134‑1 (MQ=255)                                                                                              gCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCcgccgcgccgcgtatggtgccgtctgcagccgcccgatacggcggcccaccaggtactccggcggcgcattcgccggccggatcgccacatcg                                  >  2:900407‑M2/1‑39 (MQ=255)                                                                                                 cAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCATGCTGCTGTGCCTGCTGGCCGGGGCCGa                             >  1:366910/1‑134 (MQ=255)                                                                                                   ggCGCGCTGGATACGCGACCACGTGCCCGAACCCcgccgcgccgcgtatggtgccgtctgcagccgcccgatacggcggcccaccaggtactccggcggcgcattcgccggccggatcgccacatcggcctcgc                           <  1:256325‑M2/134‑101 (MQ=255)                                                                                                   ggCGCGCTGGATACGCGACCACGTGCCCGAACCCcgc                                                                                                                            <  2:184749‑M2/37‑4 (MQ=255)                                                                                                   ggCGCGCTGGATACGCGACCACGTGCCCGAACCCcgc                                                                                                                            >  1:184749‑M2/1‑34 (MQ=255)                                                                                                   ggCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCATGCTGCTGTGCCTGCTGGCCGGGGCCGAcc                           >  2:110708/1‑134 (MQ=255)                                                                                                    gcgcgcTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCCGCACGGCATGGGCGCCGGCATGCTGCTGTGCCTGCTGGCCGGGGCCGAccc                          <  2:1005126/134‑1 (MQ=255)                                                                                                      gcgcTGGATACGCGACCACGTGCCCGAACCCcgccgcgccgcgtatggtgccgtctgcagccgcccgatacggcggcccaccaggtactccggcggcgcattcgccggccggatcgccacatcggcctcgcgcc                        >  2:256325‑M2/1‑31 (MQ=255)                                                                                                        gcTGGATACGCGACCACGTGCCCGAACCCcgccgcgccgcgtatggtgccgtctgcagccgcccgatacggcgg                                                                                  <  2:465637‑M2/74‑46 (MQ=255)                                                                                                        gcTGGATACGCGACCACGTGCCCGAACCCcgccgcgccgcgtatggtgccgtctgcagccgcccgatacggcgg                                                                                  >  1:465637‑M2/1‑29 (MQ=255)                                                                                                            gATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCATGCTGCTGTGCCTGCTGGCCGGGGCCGACCCAGAGCt                    <  2:667776/132‑1 (MQ=255)                                                                                                             aTACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGcc                                                                                                             >  1:480479/1‑42 (MQ=255)                                                                                                             aTACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGcc                                                                                                             <  2:480479/42‑1 (MQ=255)                                                                                                             aTACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGcc                                                                                                             >  1:646645/1‑42 (MQ=255)                                                                                                             aTACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGcc                                                                                                             <  2:646645/42‑1 (MQ=255)                                                                                                                          tGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCAtg                                                       <  1:897465/83‑1 (MQ=255)                                                                                                                          tGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCAtg                                                       >  2:897465/1‑83 (MQ=255)                                                                                                                          tGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCATGCTGCTGTGCCTGCTGGCCGGGGCCGACCCAGAGCTGGTGCGGCTGgcgc      >  2:769471/1‑132 (MQ=255)                                                                                                                            cccGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCATGCTGCTGTGCCTGCTGGCCGGGGCCGACCCAGAGCTGGTGCGGCTGGCGCCAg   <  1:769471/133‑1 (MQ=255)                                                                                                                            cccGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGAGGATGCCGTGCGGCACGGCATGGGCGCCGGCATGCTGCTGTGCCTGCTGGCCGGGGCCGACCCAGAGCTGGTGCGGCTGGCGCCAGt  <  1:605227/134‑1 (MQ=255)                                                                                                                                    |                                                                                                                              CAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACGTGCCCGAACCCCGCCGCGCCGTCAGCGCCGACAGCCTGGTGGCGATGGCGGATGCCGTGCGGCACGGCATGGGCGCCGGCATGCTGCTGTGCCTGCTGGCCGGGGCCGACCCAGAGCTGGTGCGGCTGGCGCCAGT  >  AM260479/2064175‑2064431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.