| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AM260479 | 1,464,441 | Δ37 bp | coding (125‑161/552 nt) | h16_A1354 → | conserved hypothetical protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 1464441 | 1464477 | 37 | 30 [0] | [0] 30 | h16_A1354 | conserved hypothetical protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 1464440 | 0 (0.000) | 30 (1.090) | 21/214 | 0.3 | 100% | coding (124/552 nt) | h16_A1354 | conserved hypothetical protein |
| ? | AM260479 | 1464478 = | 0 (0.000) | coding (162/552 nt) | h16_A1354 | conserved hypothetical protein | |||||
GAACCGTCCAGCAGTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAACTGCTGGTGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGCCCGGTCGACTGGCCTGATAATGACGGCTGAGCAGGCATGGCCGCGCC > AM260479/1464353‑1464605 | ccatgcacgcctgtgacctgtgtcatcagctggtgggcgaaccgtccagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACg < 1:360500‑M2/9‑1 (MQ=255) catgcacgcctgtgacctgtgtcatcagctggtgggcgaaccgtccagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACgg < 1:165679‑M2/10‑1 (MQ=255) tgcccgcctgtgacctgtgtcatcagctggtgggcgaaccgtccagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGc < 1:939457‑M2/12‑1 (MQ=255) cgcctgtgacctgtgtcatcagctggtgggcgaaccgtccagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTgcg < 2:990217‑M2/16‑1 (MQ=255) cgcctgtgacctgtgtcatcagctggtgggcgaaccgtccagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTgcg < 2:1013797‑M2/16‑1 (MQ=255) cgcctgtgacctgtgtcatcagctggtgggcgaaccgtccagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTgcg < 1:942813‑M2/16‑1 (MQ=255) cgcctgtgacctgtgtcatcagctggtgggcgaaccgtccagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTgcg < 1:19447‑M2/16‑1 (MQ=255) atcagctggtgggcgaaccgtccagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGcc > 2:871079‑M2/102‑122 (MQ=255) atcagctggtgggcgaaccgtccagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGcc < 1:871079‑M2/21‑1 (MQ=255) gaaccgtccagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTggg > 1:872647‑M2/88‑134 (MQ=255) cagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCag > 1:477697‑M2/80‑112 (MQ=255) cagcgtgccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCag < 2:477697‑M2/33‑1 (MQ=255) ccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAata < 2:276082‑M2/61‑1 (MQ=255) ccgccacacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAata < 2:872647‑M2/61‑1 (MQ=255) acacgagcacctggctgcctctggcattgcggccatgggcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCag > 2:953697‑M2/68‑100 (MQ=255) acacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCag < 1:953697‑M2/33‑1 (MQ=255) acacgagcacctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGc > 2:374520‑M2/68‑134 (MQ=255) cctggctgcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGcc > 2:239932‑M2/59‑134 (MQ=255) gcctctggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGccc > 2:527423‑M2/52‑134 (MQ=255) tggcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGCCCGGt < 1:374520‑M2/86‑1 (MQ=255) gcattgcggccatgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGCCCGGTCGAc < 1:999204‑M2/90‑1 (MQ=255) catgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTggg > 1:750546‑M2/35‑81 (MQ=255) catgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTggg < 2:750546‑M2/47‑1 (MQ=255) catgagcaaccggtgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGCCCGGTCGACTGGCCTGAt > 2:516429‑M2/35‑133 (MQ=255) tgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGc > 1:593167‑M2/22‑88 (MQ=255) tgcaaggtcgacagccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGc < 2:593167‑M2/67‑1 (MQ=255) ccgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGCCCGGTCGACTGGCCTGATAATGACGGCTGAGCAGGCATGgccgcgc > 1:126190‑M2/8‑134 (MQ=255) cgctggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGCCCGGTCGACTGGCCTGATAATGACGGCTGAGCAGGCATGgccgcgcc < 1:527423‑M2/128‑1 (MQ=255) ggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGCCCgg > 2:491120‑M2/3‑87 (MQ=255) ggCGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGCCCgg < 1:491120‑M2/85‑1 (MQ=255) | GAACCGTCCAGCAGTGCCGCCACACGAGCACCTGGCTGCCTCTGGCATTGCGGCCATGAGCAACCGGTGCAAGGTCGACAACTGCTGGTGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGCTGCACGGGCTGCGGCGCCTGGATGTACCAGAGCACGGCATTGGGTGAGCCGCCGAATATGTGGCGAATGGGCCCGCGCCCGGTCGACTGGCCTGATAATGACGGCTGAGCAGGCATGGCCGCGCC > AM260479/1464353‑1464605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |