| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 518,612 | G→C | intergenic (+17/‑48) | h16_A0492 → / → pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 518,612 | 0 | G | C | 100.0% | 117.7 / NA | 31 | intergenic (+17/‑48) | h16_A0492/pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (15/16); total (15/16) | |||||||||||
ATGGCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGGGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACC > AM260479/518489‑518738 | aTGGCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCcgcg > 1:288515/1‑134 (MQ=255) gCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCgcgg < 1:569050/134‑1 (MQ=255) cAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGa > 2:321868/1‑133 (MQ=255) ggTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAAt < 2:581264/134‑1 (MQ=255) cTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGcc > 2:13814/1‑134 (MQ=255) cTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGcc > 2:25745/1‑134 (MQ=255) cTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGcc > 1:779477/1‑134 (MQ=255) aGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGaaa < 2:1023865/98‑1 (MQ=255) aGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGaaa > 1:1023865/1‑98 (MQ=255) aGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGcc > 1:411904/1‑134 (MQ=255) ccAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 2:779477/134‑1 (MQ=255) ccAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 1:74036/134‑1 (MQ=255) cAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAt < 1:25745/134‑1 (MQ=255) cAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAt < 1:991464/134‑1 (MQ=255) aGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa < 2:73566/132‑1 (MQ=255) aGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCa > 1:73566/1‑132 (MQ=255) cTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGCAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc < 1:28954/134‑1 (MQ=255) cACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAtt < 1:1139616/123‑1 (MQ=255) cACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCAtt > 2:1139616/1‑123 (MQ=255) tGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCaa > 2:880101/1‑65 (MQ=255) tGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCaa < 1:880101/65‑1 (MQ=255) ccccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGt > 1:664043/1‑87 (MQ=255) ccccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGt < 2:664043/87‑1 (MQ=255) ccAATCTGGCGAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGAt < 2:1089568/134‑1 (MQ=255) gAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGc < 2:288515/134‑1 (MQ=255) gAAATAACGTCTGGCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGc < 1:542120/134‑1 (MQ=255) ggCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc < 2:63780/87‑1 (MQ=255) ggCCGGCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGc > 1:63780/1‑87 (MQ=255) ggCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAAcc > 2:144870/1‑134 (MQ=255) ggCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAAcc > 2:443438/1‑134 (MQ=255) ggCGCCGCGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCACCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAAcc > 1:111369/1‑134 (MQ=255) | ATGGCACCTTCACCGGCGCGCAGGTGCGCGAGGCGATCCAGGGCCATGTGCTGGCGCAGGCCAGCCTCACCGGCACTTATACGCTGAACCCCAATCTGGCGAAATAACGTCTGGCCGGCGCCGGGCCAGCCGCGCGGCGCCGGCCTCAAAGGAAATCCCGAAGGAAACGGCATGTCGCAAAGCCCCGGGCCGCATTCGCTGGCCTATACCCACCTGATCGTGATCCGCCACGGCGAAACGGCCTGGAACC > AM260479/518489‑518738 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |