| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 452,997 | Δ1 bp | intergenic (‑22/+116) | h16_A0432 ← / ← coxF | Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260479 | 452,994 | 0 | T | . | 100.0% | 44.1 / NA | 11 | intergenic (‑19/+119) | h16_A0432/coxF | Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (5/6); total (5/6) | |||||||||||
CCGGGTTGCCCGGACGAATGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCGTTTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGAT > AM260479/452879‑453123 | ccGGGTTGCCCGGACGAATGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGaa < 2:493964/133‑1 (MQ=255) gggTTGCCCGGACGAATGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAgcg > 1:778854/1‑134 (MQ=255) gACGAATGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAg > 1:889394/1‑134 (MQ=255) tGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCg > 1:269154/1‑134 (MQ=255) aCGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCgg < 2:269154/133‑1 (MQ=255) aCGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCgg < 2:778854/133‑1 (MQ=255) gcgcCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGc < 2:889394/134‑1 (MQ=255) cACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGggcgg < 2:893158/134‑1 (MQ=255) acgccgccGGGCAGCACCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCAt > 1:673060/3‑134 (MQ=255) gcagcaCCTCCAGCAGCTTGTTGCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACtt < 2:673060/134‑1 (MQ=255) ttgCG‑TTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGAt > 1:637373/1‑134 (MQ=255) | CCGGGTTGCCCGGACGAATGACGGCGATCGATTCCGGCAGCGCCGCGGCCAGCGTGCGGGCGCTGCGCCAGGCCACGGAGCGGCCGCCGGGCAGCACCTCCAGCAGCTTGTTGCGTTTTGCCGGCGGCGTCGAAGCGGCGGCCGTAGCCTGCGGCCAGCAGGATGCCGGTGGGCAGGTCGGTGCGGAGCAGGGGAGCGTTGGGGGCGGCAGTCATGGCGGCACTTGCGAGGTCGTCAGGTGGGAT > AM260479/452879‑453123 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |