Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 2,907,313 Δ1 bp coding (189/1221 nt) h16_A2693 → conserved hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604792,907,3110A.100.0% 114.6 / NA 27coding (187/1221 nt)h16_A2693conserved hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (13/14);  total (13/14)

CGCCGCTGCCCGCGCAGGCGGCCGCCGCTGCCGCCGGCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGGACAAGAAACAGCAATTATGCCGGGCGAACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCTCCGCACCCAAGG  >  AM260479/2907183‑2907431
                                                                                                                                |                                                                                                                        
cgccgcTGCCCGCGCAGGCGGCCGCCGCTGCCGCCGGCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGaacagc                                                                                                                     <  1:134310/134‑5 (MQ=255)
cgccgcTGCCCGCGCAGGCGGCCGCCGCTGCCGCCGGCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGaacagc                                                                                                                     <  1:890879/134‑5 (MQ=255)
                           cTGCCGCCGGCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTAc                                                                                       <  1:898926/134‑1 (MQ=255)
                             gccgccGGCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCt                                                                                     >  2:924090/1‑134 (MQ=255)
                             gccgccGGCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCt                                                                                     >  1:757676/1‑134 (MQ=255)
                              ccgccgGCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTg                                                                                    <  1:191909/134‑1 (MQ=255)
                                              cACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACg                                                                    <  1:169776/134‑1 (MQ=255)
                                                          gctgctCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTg                                                                                    <  1:925306/106‑1 (MQ=255)
                                                          gctgctCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTg                                                                                    >  2:925306/1‑106 (MQ=255)
                                                                  ccGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGcc                                                <  2:405601/134‑1 (MQ=255)
                                                                       atcatGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGc                                                                                                            <  2:105105/71‑1 (MQ=255)
                                                                       atcatGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGc                                                                                                            >  1:105105/1‑71 (MQ=255)
                                                                                    acacCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCgg                              >  1:945560/1‑134 (MQ=255)
                                                                                            gagCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTggcggc                      >  2:796408/1‑134 (MQ=255)
                                                                                              gCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGc                                                               >  1:178533/1‑91 (MQ=255)
                                                                                              gCAGTACGAGCTGAGCTTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGc                                                               <  2:178533/91‑1 (MQ=255)
                                                                                                           agctTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTcgc                                                          >  2:11432/1‑83 (MQ=255)
                                                                                                           agctTCTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTcgc                                                          <  1:11432/83‑1 (MQ=255)
                                                                                                                cTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGaa                                                                                  >  1:985803/1‑54 (MQ=19)
                                                                                                                cTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGaa                                                                                  <  2:985803/54‑1 (MQ=19)
                                                                                                                cTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGc                                                               >  2:25169/1‑73 (MQ=255)
                                                                                                                cTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGc                                                               <  1:25169/73‑1 (MQ=255)
                                                                                                                cTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCt                            <  1:913945/108‑1 (MQ=255)
                                                                                                                cTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCt                            >  2:913945/1‑108 (MQ=255)
                                                                                                                cTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGcc               >  2:257430/1‑121 (MQ=255)
                                                                                                                cTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGcc               <  1:257430/121‑1 (MQ=255)
                                                                                                                cTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCt              <  2:310689/122‑1 (MQ=255)
                                                                                                                cTGGGAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCt              >  1:310689/1‑122 (MQ=255)
                                                                                                                   ggAATCGATCAAGAACAGCAATTATGCCGGCGACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCTCCGCACCCAAgg  <  1:924090/131‑1 (MQ=255)
                                                                                                                                |                                                                                                                        
CGCCGCTGCCCGCGCAGGCGGCCGCCGCTGCCGCCGGCCCCGCGGCCACGGAACCGCTGCTGCTCGCCGGCATCATGCCCAAGAACACCGAGGAGCAGTACGAGCTGAGCTTCTGGGAATCGGACAAGAAACAGCAATTATGCCGGGCGAACTACGAGGCCTACCTGAAGCAGTACCCCAACGGACGCTTCGCGGTGCTGGCCAGGGCGCGCCTGGAGCGGCTGGCGGCGTCCGCCTCCGCACCCAAGG  >  AM260479/2907183‑2907431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: