Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 3,247,999 Δ1 bp coding (763/813 nt) h16_A3001 → transcriptional regulator, LysR‑family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604793,247,9970C.100.0% 89.8 / NA 22coding (761/813 nt)h16_A3001transcriptional regulator, LysR‑family
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (11/11);  total (11/11)

CGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGATTCGTCGCCGGCGTCGCCTATGATGCCCGAGCCGCGACCCGCAACCTTGCCCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACCGTGACGCACCTGGCCGTCAGCAGGGTGCCTACCTGCGCAGCTTTGTGTACACCTTCATCGAGCTGTTCTCGCCGACGCTCAA  >  AM260479/3247889‑3248127
                                                                                                            |                                                                                                                                   
cGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTcggccggc                                                                                                        <  1:578735/134‑1 (MQ=255)
           cTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTgg                                                                                             >  2:746461/1‑134 (MQ=255)
           cTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTgg                                                                                             >  1:295112/1‑134 (MQ=255)
                          gcgGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCa                                                                             >  1:767093/1‑134 (MQ=255)
                           cgGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCAc                                                                            <  1:878871/134‑1 (MQ=255)
                             gACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCt                                                                          <  1:746461/134‑1 (MQ=255)
                              aCGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGTAGCAACGTGACGc                                                                              >  2:348766/1‑129 (MQ=255)
                              aCGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTCTGGCAGCAACGTGACGc                                                                              <  1:348766/129‑1 (MQ=255)
                                      aaGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTca                                                                 <  2:295112/133‑1 (MQ=255)
                                       aGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTca                                                                 >  1:707324/1‑132 (MQ=255)
                                       aGACGTACGTGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTca                                                                 <  2:707324/132‑1 (MQ=255)
                                              cgtGGAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTg                                                         >  1:869438/1‑134 (MQ=255)
                                                 ggAGATCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGcc                                                       >  2:936139/1‑133 (MQ=255)
                                                      tCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGgc                                                                                            >  1:737840/1‑92 (MQ=255)
                                                      tCGGGCTGGGCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGgc                                                                                            <  2:737840/92‑1 (MQ=255)
                                                              ggCGTGGGCATCGTCGCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGCCTACCTGCGCAGCtt                                         <  2:767093/134‑1 (MQ=255)
                                                                   gggcatcgtcgCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGCCTACCTgcgc                                              >  2:603794/6‑124 (MQ=255)
                                                                   gggcatcgtcgCCGGCGTCGCCTATGATGCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGCCTACCTgcgc                                              <  1:603794/119‑1 (MQ=255)
                                                                                          atgatgCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGttt                                                                                               >  1:967071/1‑53 (MQ=12)
                                                                                          atgatgCCGAGCGCGACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGttt                                                                                               <  2:967071/53‑1 (MQ=12)
                                                                                                      gcgcgACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGCCTACCTGCGCAGCTTTGTCTACACCTTCATCGAGCTGTTCTCGCCGACGCTCa   <  2:869438/133‑1 (MQ=255)
                                                                                                       cgcgACCGCAACCTGCGCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACGTGACGCACCTGGCCGTCAAGCAGGGTGCCTACCTGCGCAGCTTTGTCTACACCTTCATCGAGCTGTTCTCGCCGACGCTCaa  >  2:939984/1‑134 (MQ=255)
                                                                                                            |                                                                                                                                   
CGGACATCGTGCTGGAGGCCATCGACGCGGACGTGATCAAGACGTACGTGGAGATCGGGCTGGGCGTGGGATTCGTCGCCGGCGTCGCCTATGATGCCCGAGCCGCGACCCGCAACCTTGCCCGGCATCTCGGCCGGCCACCTGTTTGGCAGCAACCGTGACGCACCTGGCCGTCAGCAGGGTGCCTACCTGCGCAGCTTTGTGTACACCTTCATCGAGCTGTTCTCGCCGACGCTCAA  >  AM260479/3247889‑3248127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: