| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260480 | 951,073 | +G | intergenic (‑29/+230) | h16_B0838 ← / ← h16_B0839 | conserved hypothetical protein/transcriptional regulator, CRP‑family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AM260480 | 951,073 | 1 | . | G | 100.0% | 108.1 / NA | 29 | intergenic (‑29/+230) | h16_B0838/h16_B0839 | conserved hypothetical protein/transcriptional regulator, CRP‑family |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (13/16); total (13/16) | |||||||||||
CGCTGCCGACGGCATGGCTTGCACGGGCTGGGCGGACTGCACCGGCTGACTGGATTGCATCGGCTGCATCGGCTGCGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCT‑CTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTACCTCCTAGAACGCCTACAGGCAAGGGAACAGTCACTGTAGCGCCG > AM260480/950958‑951197 | cgcTGCCGACGGCATGGCTTGCACGGGCTGGGCGGACTGCACCGGCTGACTGGATTGCATCGGCTGCATCGGCTGCGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGt < 1:681662/134‑1 (MQ=255) tGCACGGGCTGGGCGGACTGCACCGGCTGACTGGATTGCATCGGCTGCATCGGCTGCGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCgcgc > 2:230712/1‑133 (MQ=255) gCGGACTGCACCGGCTGACTGGATTGCATCGGCTGCATCGGCTGCGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAg < 1:579696/134‑1 (MQ=255) gACTGCACCGGCTGACTGGATTGCATCGGCTGCATCGGCTGCGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGa > 1:968417/1‑134 (MQ=255) aCCGGCTGACTGGATTGCATCGGCTGCATCGGCTGCGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGc > 1:978717/1‑134 (MQ=255) ggCTGACTGGATTGCATCGGCTGCATCGGCTGCGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAg < 1:552164/134‑1 (MQ=255) aCTGGATTGCATCGGCTGCATCGGCTGCGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGatcat < 2:827667/99‑1 (MQ=255) aCTGGATTGCATCGGCTGCATCGGCTGCGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGatcat > 1:827667/1‑99 (MQ=255) gcatcggctgcatcggctGCGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCAtt > 2:870699/1‑134 (MQ=255) atcggctgcatcggctgcGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCg < 1:951994/134‑1 (MQ=255) gctgcatcggctgcGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCaa < 2:936641/63‑1 (MQ=255) gctgcatcggctgcGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCaa > 1:936641/1‑63 (MQ=255) tgcatcggctgcGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAg < 1:126841/113‑1 (MQ=255) tgcatcggctgcGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAg > 2:126841/1‑113 (MQ=255) catcggctgcGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTAcctc > 2:120799/1‑134 (MQ=255) aTTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTACCTCCTAGAACGCCTa < 1:529706/133‑1 (MQ=255) ttGGCATCGGCTGGCTCGGCTGCAGGGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTAcctcct > 2:413820/1‑123 (MQ=255) ttGGCATCGGCTGGCTCGGCTGCAGGGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTAcctcct < 1:413820/123‑1 (MQ=255) gCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTACCTCCTAGAACGCCTACAgg < 1:120799/133‑1 (MQ=255) aTCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTACCTCCTAGAACGCCTACAGGCaa < 2:968417/134‑1 (MQ=255) tCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAg > 2:1014718/1‑43 (MQ=25) tCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAg < 1:1014718/43‑1 (MQ=25) ggctCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTACCTCCTAGAACGCCTACa < 2:816121/122‑1 (MQ=255) ggctCGGCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTACCTCCTAGAACGCCTACa > 1:816121/1‑122 (MQ=255) ggCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCAtt < 2:574274/93‑1 (MQ=255) ggCTGCA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCAtt > 1:574274/1‑93 (MQ=255) cA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTACCTCCTAGAACGCCTACAGGCAAGGGAACAGTCACt > 1:895500/1‑130 (MQ=255) cA‑GGGGCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTACCTCCTAGAACGCCTACAGGCAAGGGAACAGTCACt < 2:895500/130‑1 (MQ=255) gCTGAGCCTGCTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTACCTCCTAGAACGCCTACAGGCAAGGGAACAGTCACTGTAGcgccg < 2:978717/134‑1 (MQ=255) | CGCTGCCGACGGCATGGCTTGCACGGGCTGGGCGGACTGCACCGGCTGACTGGATTGCATCGGCTGCATCGGCTGCGTCATTGGCATCGGCTGGCTCGGCTGCA‑GGGGCTGAGCCT‑CTGCGCAAACAGCGGGTAGGACGCGATCATCGCGCCAGCCACGACCAGGGATTTCGCCAGATGTTGCTTCATTCGTGTACCTCCTAGAACGCCTACAGGCAAGGGAACAGTCACTGTAGCGCCG > AM260480/950958‑951197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |