Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 3,301,576 +G intergenic (+45/‑146) lspA → / → dfp lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM2604793,301,5741.G100.0% 13.4 / NA 5intergenic (+43/‑148)lspA/dfplipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (1/4);  total (1/4)

GGCCTTCAACGTGGCCGACTGCGCGATCACGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAACCGCCCG  >  AM260479/3301447‑3301619
                                                                                                                                |                                             
ggccTTCAACGTGGCCGACTGCGCGATCACGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAgggtga                                         <  1:207505/134‑5 (MQ=255)
ggccTTCAACGTGGCCGACTGCGCGATCACGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAgggtga                                         <  2:758930/134‑5 (MQ=255)
ggccTTCAACGTGGCCGACTGCGCGATCACGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAgggt                                           >  1:354192/1‑130 (MQ=255)
ggccTTCAACGTGGCCGACTGCGCGATCACGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAgggt                                           >  1:581319/1‑130 (MQ=255)
   cTTCAACGTGGCCGACTGCGCGATCACGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAg                                              >  1:683846/1‑126 (MQ=255)
   cTTCAACGTGGCCGACTGCGCGATCACGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAg                                              <  2:683846/126‑1 (MQ=255)
                     cgcgATCACGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGca                       <  2:581319/132‑1 (MQ=255)
                       cgATCACGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGcaccac                   <  2:119290/134‑1 (MQ=255)
                               gTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAg           <  2:354192/134‑1 (MQ=255)
                                   gcgcGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAgggtga                                         >  1:606258/1‑95 (MQ=255)
                                   gcgcGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAgggtga                                         <  2:606258/99‑5 (MQ=255)
                                                                   aGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCa                                                <  1:636122/61‑1 (MQ=255)
                                                                   aGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCa                                                >  2:636122/1‑61 (MQ=255)
                                                                                                           tcCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAAccgcccg  <  1:641778/67‑1 (MQ=255)
                                                                                                           tcCCCTCACGGGGAGAGGCCAGGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAAccgcccg  >  2:641778/1‑67 (MQ=255)
                                                                                                                                |                                             
GGCCTTCAACGTGGCCGACTGCGCGATCACGGTCGGCGCGGTGCTGCTGATCGTGGACGAGCTGCGCAGGGTGCGGCGCCACTGAGCGCCCTGATTGTGTTCCGCTCTCCCCTCACGGGGAGAGGCCAGGTGAGGGGCGGTTCAGCAAGGCACCACGCCACCAGAACCGCCCG  >  AM260479/3301447‑3301619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: