| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 2064164 | 26 (1.010) | 7 (0.300) | 7/194 | 1.2 | 28.3% | coding (515/909 nt) | h16_A1900 | transcriptional regulator, LysR‑family |
| ? | AM260479 | = 2064306 | 12 (0.510) | coding (657/909 nt) | h16_A1900 | transcriptional regulator, LysR‑family | |||||
TCAACAACAGCTTCCTGAGCCTGAGCCGGCGCGAGGCCGATGTGGCGATCCGGCCGGCGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACG > AM260479/2064035‑2064295 | tcAACAACAGCTTCCTGAGCCTGAGCCGGCGCGAGGCCGATGTGGCGATCCGGCCGGCGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGgggt < 1:700496‑M1/134‑5 (MQ=255) aGCTTCCTGAGCCTGAGCCGGCGCGAGGCCGATGTGGCGATCCGGCCGGCGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTgcagca < 1:191743/134‑1 (MQ=255) ctgagcctgagcCGGCGCGAGGCCGATGTGGCGATCCGGCCGGCGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCgg > 1:18878/1‑134 (MQ=255) ggCGCGAGGCCGATGTGGCGATCCGGCCGGCGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACgg > 1:901666/1‑132 (MQ=255) ggCGCGAGGCCGATGTGGCGATCCGGCCGGCGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACgg > 2:154892/1‑132 (MQ=255) aGGCCGATGTGGCGATCCGGCCGGCGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGAc > 2:823781/1‑134 (MQ=255) ggccggcGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGAc < 1:823781/134‑1 (MQ=255) ccggcGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTAc < 2:565030/81‑1 (MQ=255) ccggcGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTAc > 1:565030/1‑81 (MQ=255) cggcGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTgg > 1:105596/1‑134 (MQ=255) gcGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTc < 2:105596/134‑1 (MQ=255) cgccgcCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTa < 2:901666/133‑1 (MQ=255) tggGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGAc < 2:509595/134‑1 (MQ=255) tggGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGAc < 1:326654/134‑1 (MQ=255) tggGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGAc < 1:154892/134‑1 (MQ=255) aTCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGt > 2:555337/1‑133 (MQ=255) cGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTca > 1:339170/1‑133 (MQ=255) tGCAGACGGCACCATACGCGGCGCGGCGgggttcggg < 2:982602‑M1/37‑10 (MQ=255) tGCAGACGGCACCATACGCGGCGCGGCGgggttcggg > 1:982602‑M1/1‑28 (MQ=255) aGACGGCACCATACGCGGCGCGGCGgggttcgggcacgtggtcgcgtatccagcgcgcc > 2:3126‑M1/1‑25 (MQ=255) aGACGGCACCATACGCGGCGCGGCGgggttcgggcacgtggtcgcgtatccagcgcgcc < 1:3126‑M1/59‑35 (MQ=255) gACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAgg < 2:18878/134‑1 (MQ=255) gACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAgg < 2:339170/134‑1 (MQ=255) ccATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTc > 2:473919/1‑77 (MQ=255) ccATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTc < 1:473919/77‑1 (MQ=255) aTACGCGGCGCGGCGgggttcgggcacgtggtcgcgtatccagcgcgcctgggcaaggtg < 2:116289‑M1/60‑46 (MQ=255) aTACGCGGCGCGGCGgggttcgggcacgtggtcgcgtatccagcgcgcctgggcaaggtg > 1:116289‑M1/1‑15 (MQ=255) aTACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTg > 2:303153/1‑87 (MQ=255) aTACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTg < 1:303153/87‑1 (MQ=255) gcggcggggttcgggcacgtggtcgcgtatccagcgcgcctgggcaaggtgtgacagcgcttcgtcc > 2:470280‑M1/1‑6 (MQ=255) gcggcggggttcgggcacgtggtcgcgtatccagcgcgcctgggcaaggtgtgacagcgcttcgtcc < 1:470280‑M1/67‑62 (MQ=255) cggcgcTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCa > 2:158944/1‑134 (MQ=255) gcgcTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACg < 1:555337/134‑1 (MQ=255) cgcTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTc < 1:747130/62‑1 (MQ=255) cgcTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTc > 2:747130/1‑62 (MQ=255) | TCAACAACAGCTTCCTGAGCCTGAGCCGGCGCGAGGCCGATGTGGCGATCCGGCCGGCGAATGCGCCGCCGGAGTACCTGGTGGGCCGCCGTATCGGGCGGCTGCAGACGGCACCATACGCGGCGCGGCGCTACCTGCAGCAGCTCGGCCTGCCAACGGAAGCCGACCATCCGCGGCTGGCGGACTGGTCGGCCTATGACTGGGTCGTGCCGGACGAAGCGCTGTCACACCTTGCCCAGGCGCGCTGGATACGCGACCACG > AM260479/2064035‑2064295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |