New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260479	= 2073258	12 (0.470)	4 (0.190) +TTGGCGTTGCGCGCCAGCA	4/176	1.7	28.9%	coding (1285/2613 nt)	acnM	Methyl‑cis‑aconitic acid hydratase/Aconitate hydratase
	?	AM260479	2073269 =	12 (0.470)					coding (1296/2613 nt)	acnM	Methyl‑cis‑aconitic acid hydratase/Aconitate hydratase

AGCCGAAGGCCTGATGCCGGACGGCGCGGTCATCATCGCCGCCATCACCAGCTGCACCAACACCAGCAACCCGCGCAACGTGATCGCTGCCGCGCTGCTGGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGTCGAGCTGTACCTGGAAGAAGCGAATCTGCTGCCCGACCTCGAGAAGCTTGGCTTCGGC  >  AM260479/2073152‑2073386                                                                                                                      |                                                                                                                      aGCCGAAGGCCTGATGCCGGACGGCGCGGTCATCATCGCCGCCATCACCAGCTGCACCAACACCAGCAACCCGCGCAACGTGATCGCTGCCGCGCTGCTGGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCa                                                                                                       <  1:1023338/134‑1 (MQ=255)               tGCCGGACGGCGCGGTCATCATCGCCGCCATCACCAGCTGCACCAACACCAGCAACCCGCGCAACGTGATCGCTGCCGCGCTGCTGGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAg                                                                                         >  1:329213/1‑134 (MQ=255)                                   atcGCCGCCATCACCAGCTGCACCAACACCAGCAACCCGCGCAACGTGATCGCTGCCGCGCTGCTGGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGAt                                                                      <  1:48739/133‑1 (MQ=255)                                            aTCACCAGCTGCACCAACACCAGCAACCCGCGCAACGTGATCGCTGCCGCGCTGCTGGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGt                                                            <  1:298797/134‑1 (MQ=255)                                            aTCACCAGCTGCACCAACACCAGCAACCCGCGCAACGTGATCGCTGCCGCGCTGCTGGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGt                                                            <  1:543517/134‑1 (MQ=255)                                                  aGCTGCACCAACACCAGCAACCCGCGCAACGTGATCGCTGCCGCGCTGCTGGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGTCGAGCt                                                      >  2:223842/1‑134 (MQ=255)                                                          cAACACCAGCAACCCGCGCAACGTGATCGCTGCCGCGCTGCTGGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGTCGAGCTGTACCTgg                                              <  1:172304/134‑1 (MQ=255)                                                                     acgtgatcgctgccgcgctgctggcgcgcattggcgttgcgcgccagcaGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGt                                                            >  1:585382‑M2/50‑109 (MQ=255)                                                                     acgtgatcgctgccgcgctgctggcgcgcattggcgttgcgcgccagcaGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGt                                                            <  2:585382‑M2/60‑1 (MQ=255)                                                                        cgcgCAACGTGATCGCTGCCGCGCTGCTGGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGt                                                            >  1:709460/1‑106 (MQ=255)                                                                        cgcgCAACGTGATCGCTGCCGCGCTGCTGGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGt                                                            <  2:709460/106‑1 (MQ=255)                                                                                             cgcgcattggcgttgcgcgccagcaGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGTCGAGCTGTACCTGGAAGAAGCGAATctgc                               >  1:488354‑M2/26‑114 (MQ=255)                                                                                             cgcgcattggcgttgcgcgccagcaGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGTCGAGCTGTACCTGGAAGAAGCGAATctgc                               <  2:488354‑M2/89‑1 (MQ=255)                                                                                                  ctgGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGTCGAGCTGTACCTGGAAGAAGCGAATCTGCTGCCCGACCTCGAGAAGCTTGGc        <  2:329213/132‑1 (MQ=255)                                                                                                      cgcgcAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGTCGAGCTGTACCTGGAAGAAGCGAATCTGCTGCCCGACCTCGAGAAGCTTGGCTTCgg   >  2:61773/1‑133 (MQ=255)                                                                                                      cgcgcAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGTCGAGCTGTACCTGGAAGAAGCGAATCTGCTGCCCGACCTCGAGAAGCTTGGCTTCGGc  <  1:61773/134‑1 (MQ=255)                                                                                                                      |                                                                                                                      AGCCGAAGGCCTGATGCCGGACGGCGCGGTCATCATCGCCGCCATCACCAGCTGCACCAACACCAGCAACCCGCGCAACGTGATCGCTGCCGCGCTGCTGGCGCGCAACGCCAATGCGCGCGGCCTGGCGCGCAAGCCGTGGGTCAAGTCGTCGCTGGCCCCGGGATCCAAGGCAGTCGAGCTGTACCTGGAAGAAGCGAATCTGCTGCCCGACCTCGAGAAGCTTGGCTTCGGC  >  AM260479/2073152‑2073386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.