| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260480 | 251597 = | 5 (0.180) | 4 (0.160) | 4/196 | 2.0 | 28.0% | coding (497/1023 nt) | h16_B0225 | Integrase/recombinase protein |
| ? | AM260480 | 251666 = | 16 (0.640) | coding (566/1023 nt) | h16_B0225 | Integrase/recombinase protein | |||||
CGGCCGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGCGCCGCTACGGGCCTGGCTG > AM260480/251540‑251793 | ggaccatgcgcagcgccatccggccgggggcgccggcttcgatggcatcgacccgcagcgcccgcgcttcgcctaccttcaggccgccgccgagcagcaccgccagcagggccacatcgcgggcgcTGCGGGTc < 1:932569‑M2/8‑1 (MQ=255) aTCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGgcgc > 1:1925/1‑134 (MQ=255) gacccgcaGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTcc < 1:932569‑M1/126‑1 (MQ=255) GCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 2:1925‑M1/1‑134 (MQ=255) GCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 1:239180‑M1/1‑134 (MQ=255) GCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 2:762788‑M1/1‑134 (MQ=255) GCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 1:616905‑M1/1‑134 (MQ=255) CGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAAc < 1:110812‑M1/132‑1 (MQ=255) CGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAAc > 2:110812‑M1/1‑132 (MQ=255) CGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACgg < 2:98481‑M1/134‑1 (MQ=255) cgcttcgcctaccttcaggccgccgccgagcagcaccgccagcagggccacatcgcgggcgcTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGcc > 2:537310‑M2/63‑134 (MQ=255) CGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGcc < 1:872416‑M1/134‑1 (MQ=255) gtgGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 2:66786/1‑125 (MQ=255) gtgGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa < 1:66786/125‑1 (MQ=255) gtgGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa < 2:58904/125‑1 (MQ=255) gtgGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 1:58904/1‑125 (MQ=255) cgcctaccttcaggccgccgccgagcagcaccgccagcagggccacatcgcgggcgcTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAg < 1:537310‑M2/75‑1 (MQ=255) ctgGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCg < 1:147830/133‑1 (MQ=255) ggCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTc > 1:896792/1‑103 (MQ=255) ggCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTc < 2:896792/103‑1 (MQ=255) gctCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa < 2:176798/105‑1 (MQ=255) gctCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 1:176798/1‑105 (MQ=255) ccgagcagcaccgccagcagggccacatcgcgggcgcTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAg > 2:467688‑M2/38‑134 (MQ=255) cggcggcggCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 2:540114/1‑102 (MQ=255) cggcggcggCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa < 1:540114/102‑1 (MQ=255) gcCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCAt < 1:98481/134‑1 (MQ=255) aaGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGcgcc < 2:932569/134‑1 (MQ=255) aaGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 2:623449/1‑79 (MQ=255) aaGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa < 1:623449/79‑1 (MQ=255) gggcgcTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGCGCCGCTACGGGCctggctg < 2:872416‑M2/128‑1 (MQ=255) ggcgcTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa < 1:670406‑M2/67‑1 (MQ=255) ggcgcTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACaa > 2:670406‑M2/6‑72 (MQ=255) | CGGCCGGCATGCCGGCCGGCGACACGCGCACCGCGGCATCGCCCACCCAATGGAAGCGCGCCCGCGATGTGGCCCTGCTGGCGGTGCTGCTCGGCGGCGGCCTGAAGGTAGGCGAAGCGCGGGCGCTGCGGGTCGATGCCATCGAAGCCGGCGCCCCCGGCCGGATGGCGCTGCGCATGGTCCGCGCGGACAACGGCCGAGCCTATACCGTGCCGCTGTTCAGCCTGGCCCATGCGCCGCTACGGGCCTGGCTG > AM260480/251540‑251793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |