New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 2405358 =14 (0.510)4 (0.160) 4/200 2.0 21.0% intergenic (‑74/+114) h16_B2126/h16_B2127 Amidase/MFS transporter, ACS family
?AM260480 2405400 = 17 (0.660)intergenic (‑116/+72) h16_B2126/h16_B2127 Amidase/MFS transporter, ACS family

GCGTGTCAGCAACCATGCTGCCCCTCCGCTTGCGCCAGCGCCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAATCGCCAGGATCAGCACCGCCG  >  AM260480/2405269‑2405524
                                                                                                                                   |                                                                                                                            
gCGTGTCAGCAACCATGCTGCCCCTCCGCTTGCGCCAGCGCCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCcgc                                                                                                                            >  2:15710/1‑134 (MQ=255)
                                  ccAGCGCCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCa                                                                                          >  1:539461/1‑134 (MQ=255)
                                  ccAGCGCCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCa                                                                                          >  1:82114/1‑134 (MQ=255)
                                       gcCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATcgcg                                                                                     <  2:82114/134‑1 (MQ=255)
                                                           caTGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGttgctt                                                                 <  1:15710/134‑1 (MQ=255)
                                                                 cgccATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGTCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCa                                                           >  2:646233/1‑134 (MQ=255)
                                                                                      ggcggcCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGttgctt                                                                 <  2:859580/107‑1 (MQ=255)
                                                                                      ggcggcCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGttgctt                                                                 >  1:859580/1‑107 (MQ=255)
                                                                                                         tggcaccccaggattgcgagcaggccCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATcgc                                                                                      <  1:137472‑M2/41‑1 (MQ=255)
                                                                                                         tggcaccccaggattgcgagcaggccCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATcgc                                                                                      >  2:137472‑M2/27‑67 (MQ=255)
                                                                                                             gTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGt                           <  1:520408/122‑1 (MQ=255)
                                                                                                             gTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGt                           >  2:520408/1‑122 (MQ=255)
                                                                                                                    cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCt                                >  1:354743/1‑110 (MQ=255)
                                                                                                                    cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCt                                <  2:354743/110‑1 (MQ=255)
                                                                                                                    cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAAt                      <  1:1023557/120‑1 (MQ=255)
                                                                                                                    cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAAt                      >  2:1023557/1‑120 (MQ=255)
                                                                                                                    cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAATCGCCAGGATCAGCa        >  1:995568/1‑134 (MQ=255)
                                                                                                                    cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAATCGCCAGGATCAGCa        >  1:629711/1‑134 (MQ=255)
                                                                                                                          cTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAATCGCCAGGATCAGCAccgccg  <  2:995568/134‑1 (MQ=255)
                                                                                                                           agcaggccCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTc                                                                                           >  2:192930‑M2/9‑44 (MQ=255)
                                                                                                                           agcaggccCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTc                                                                                           <  1:192930‑M2/36‑1 (MQ=255)
                                                                                                                                   |                                                                                                                            
GCGTGTCAGCAACCATGCTGCCCCTCCGCTTGCGCCAGCGCCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAATCGCCAGGATCAGCACCGCCG  >  AM260480/2405269‑2405524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.