New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	2405358 =	14 (0.510)	4 (0.160)	4/200	2.0	21.0%	intergenic (‑74/+114)	h16_B2126/h16_B2127	Amidase/MFS transporter, ACS family
	?	AM260480	2405400 =	17 (0.660)					intergenic (‑116/+72)	h16_B2126/h16_B2127	Amidase/MFS transporter, ACS family

GCGTGTCAGCAACCATGCTGCCCCTCCGCTTGCGCCAGCGCCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAATCGCCAGGATCAGCACCGCCG  >  AM260480/2405269‑2405524                                                                                                                                    |                                                                                                                             gCGTGTCAGCAACCATGCTGCCCCTCCGCTTGCGCCAGCGCCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCcgc                                                                                                                            >  2:15710/1‑134 (MQ=255)                                   ccAGCGCCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCa                                                                                          >  1:539461/1‑134 (MQ=255)                                   ccAGCGCCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCa                                                                                          >  1:82114/1‑134 (MQ=255)                                        gcCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATcgcg                                                                                     <  2:82114/134‑1 (MQ=255)                                                            caTGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGttgctt                                                                 <  1:15710/134‑1 (MQ=255)                                                                  cgccATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGTCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCa                                                           >  2:646233/1‑134 (MQ=255)                                                                                       ggcggcCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGttgctt                                                                 <  2:859580/107‑1 (MQ=255)                                                                                       ggcggcCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGttgctt                                                                 >  1:859580/1‑107 (MQ=255)                                                                                                          tggcaccccaggattgcgagcaggccCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATcgc                                                                                      <  1:137472‑M2/41‑1 (MQ=255)                                                                                                          tggcaccccaggattgcgagcaggccCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATcgc                                                                                      >  2:137472‑M2/27‑67 (MQ=255)                                                                                                              gTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGt                           <  1:520408/122‑1 (MQ=255)                                                                                                              gTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGt                           >  2:520408/1‑122 (MQ=255)                                                                                                                     cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCt                                >  1:354743/1‑110 (MQ=255)                                                                                                                     cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCt                                <  2:354743/110‑1 (MQ=255)                                                                                                                     cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAAt                      <  1:1023557/120‑1 (MQ=255)                                                                                                                     cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAAt                      >  2:1023557/1‑120 (MQ=255)                                                                                                                     cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAATCGCCAGGATCAGCa        >  1:995568/1‑134 (MQ=255)                                                                                                                     cGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAATCGCCAGGATCAGCa        >  1:629711/1‑134 (MQ=255)                                                                                                                           cTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAATCGCCAGGATCAGCAccgccg  <  2:995568/134‑1 (MQ=255)                                                                                                                            agcaggccCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTc                                                                                           >  2:192930‑M2/9‑44 (MQ=255)                                                                                                                            agcaggccCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTc                                                                                           <  1:192930‑M2/36‑1 (MQ=255)                                                                                                                                    |                                                                                                                             GCGTGTCAGCAACCATGCTGCCCCTCCGCTTGCGCCAGCGCCTGGCGCAGGCCCGCCACCATGGCCGCCATGCCGGCCAGCAGCGCGGCGGCCTGCTCGCAATCCTGGGGTGCCACCGGCACCTGCAGGCCCGCGGCGGCTTGTGCCACCAGGCCGGCGGGATCGTCATCGCGTGCTTGTGCCATGGTTGCTTGCGCCATCCCTCAGCTCCGCGATTGCATCAGCTGGCGTGGAATCGCCAGGATCAGCACCGCCG  >  AM260480/2405269‑2405524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.