New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AM260480	2644743 =	10 (0.360)	3 (0.120)	3/194	2.2	29.9%	coding (1101/2025 nt)	narX2	signal transduction histidine kinase,nitrate/nitrite‑specific
	?	AM260480	2644884 =	5 (0.200)					coding (1242/2025 nt)	narX2	signal transduction histidine kinase,nitrate/nitrite‑specific

AGCCGCAACGGCTTCCAGTCGCTGGCGGCCTTCCGCATCGAAAGCCAGCGCGGCGCCACCGGCGTGTTCGCGCTGCACTTCCGCACGCCGCGCGCGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACCGCGCTGGAACACCTGCGCCTGTCCGCGACCGCGCGCCAGCTGGCGGTGGTGGAAGAGCGCAACCTGGTGGCGCA  >  AM260480/2644789‑2645012                                                                                                |                                                                                                                                 aGCCGCAACGGCTTCCAGTCGCTGGCGGCCTTCCGCATCGAAAGCCAGCGCGGCGCCACCGGCGTGTTCGCGCTGCACTTCCGCACGCCGCGCGCGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTggg                                                                                            <  1:29120/134‑1 (MQ=255)            cTTCCAGTCGCTGGCGGCCTTCCGCATCGAAAGCCAGCGCGGCGCCACCGGCGTGTTCGCGCTGCACTTCCGCACGCcgcgcgcg                                                                                                                                  >  1:411811/1‑85 (MQ=255)            cTTCCAGTCGCTGGCGGCCTTCCGCATCGAAAGCCAGCGCGGCGCCACCGGCGTGTTCGCGCTGCACTTCCGCACGCcgcgcgcg                                                                                                                                  <  2:411811/85‑1 (MQ=255)                   tCGCTGGCGGCCTTCCGCATCGAAAGCCAGCGCGGCGCCACCGGCGTGTTCGCGCTGCACTTCCGCACGCCGCGCGCGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACcgc                                                                          >  1:21992/1‑134 (MQ=255)                                                                    ggcggcgccctggcgctgcgccgcgcgcGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACCGCGCTGGAACACCTGCGCCTGTCCGCGACCGCGCGCCAGCTGGCGgtggtg                         >  2:662272‑M2/29‑134 (MQ=255)                                                                            cctggcgctgcgccgcgcgcGCTGCCCCCGTCAGACCg                                                                                                                 <  2:899717‑M2/18‑1 (MQ=255)                                                                            cctggcgctgcgccgcgcgcGCTGCCCCCGTCAGACCg                                                                                                                 >  1:899717‑M2/21‑38 (MQ=255)                                                                                    cagctggcgcgcGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACCGCGCTGGAACACCTGCGCCTGTCCGCGACCGCGCGCCAGCTGGCGGTGGTGGAAGAGCGCAACCtgg         >  2:447431‑M2/13‑134 (MQ=255)                                                                                    cACGCCGCGCGCGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACCGCGCTGGAACACCTGCGCCTGTCCGCGACCGCGCGCCAGCTGGCGGTGGTGGAAGAGCGCAACCtgg         <  1:664041/134‑1 (MQ=255)                                                                                         cgcgcgcGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACCGCGCTGGAACACCTGCGCCTGTCCGCGACCGCGCGCCAGCTGGCGGTGGTGGAAGAGCGCAACCTGGTGgcg    <  2:21992‑M2/127‑1 (MQ=255)                                                                                          gcgcgcGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACCGCGCTGGAACACCTGCGCCTGTCCGCGACCGCGCGCCAGCTGGCGGTGGTGGAAGAGCGCAAc             >  2:559232‑M2/7‑124 (MQ=255)                                                                                          gcgcgcGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACCGCGCTGGAACACCTGCGCCTGTCCGCGACCGCGCGCCAGCTGGCGGTGGTGGAAGAGCGCAAc             <  1:559232‑M2/118‑1 (MQ=255)                                                                                           cgcgcGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACCGCGCTGGAACACCTGCGCCTGTCCGCGACCGCGCGCCAGCTGGCGGTGGTGGAAGAGCGCAACCTGGTGGCGCa  <  2:496421‑M2/129‑1 (MQ=255)                                                                                             cgcGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGc                                                                               >  2:234332‑M2/4‑55 (MQ=255)                                                                                             cgcGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGc                                                                               <  1:234332‑M2/52‑1 (MQ=255)                                                                                               cGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACCGCGCTGGAACACCTGCGCCTGTCCGCGACCGCGCGCCAGCTGGCGGTGGTGGAAGAGCGCAACCtggtg       >  1:792081‑M2/2‑125 (MQ=255)                                                                                               cGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACCGCGCTGGAACACCTGCGCCTGTCCGCGACCGCGCGCCAGCTGGCGGTGGTGGAAGAGCGCAACCtggtg       <  2:792081‑M2/124‑1 (MQ=255)                                                                                                |                                                                                                                                 AGCCGCAACGGCTTCCAGTCGCTGGCGGCCTTCCGCATCGAAAGCCAGCGCGGCGCCACCGGCGTGTTCGCGCTGCACTTCCGCACGCCGCGCGCGCTGCCCCCGTCAGACCGCCAGATGCTGGAAACACTGGGCCAGCACCTTGGCACCGCGCTGGAACACCTGCGCCTGTCCGCGACCGCGCGCCAGCTGGCGGTGGTGGAAGAGCGCAACCTGGTGGCGCA  >  AM260480/2644789‑2645012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.