Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AM260479	4004553	4004581	29	2 [0]	[0] 2	h16_A3710	response regulator, NarL‑family

CTGAACCTGAAGCGCAAGCTGGGGATCGAGGGGCGG  >  AM260479/4004517‑4004552                                    | cTGAACCTGAAGCGCAAGCTGGGGATCGAGgggcgg  <  1:959097/36‑1 (MQ=255) cTGAACCTGAAGCGCAAGCTGGGGATCGAGgggcgg  >  2:959097/1‑36 (MQ=255)                                    | CTGAACCTGAAGCGCAAGCTGGGGATCGAGGGGCGG  >  AM260479/4004517‑4004552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑