Predicted mutation
evidence seq id position mutation annotation gene description
RA AM260479 500,512 G→A W23* (TGG→TAG)  h16_A0473 → ABC‑type transporter, permease component: PAAT family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AM260479500,5120GA100.0% 70.2 / NA 19W23* (TGG→TAG) h16_A0473ABC‑type transporter, permease component: PAAT family
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (11/8);  total (11/8)

TGCCGTTGACAGCAGTGTGAAACGGAAGGCATGTCCTTCCGTTTCTTTTTGAGGACGCAACATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTGGATGATCTCGGGCCTGAAGGTAACGCTCGCCCTGGGACTCTCGTCCTGGGTCATCGCCCTGGTCATCGGTTCGGTGCTCGGCGTGCTGCGCACCGTGCCCAACAAGTGGCTGGCGGGCATCGCCGCCA  >  AM260479/500384‑500640
                                                                                                                                |                                                                                                                                
tGCCGTTGACAGCAGTGTGAAACGGAAGGCATGTCCTTCCGTTTCTTTTTGAGGACGCAACATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAgatg                                                                                                                              >  1:436692/1‑133 (MQ=255)
tGCCGTTGACAGCAGTGTGAAACGGAAGGCATGTCCTTCCGTTTCTTTTTGAGGACGCAACATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAgatg                                                                                                                              <  2:436692/133‑1 (MQ=255)
                 tgAAACGGAGGCATGTCCTTCCGTTTCTTTTTGAGGACGCAACATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGAAGGTaa                                                                                                           <  1:281813/134‑1 (MQ=255)
                     aCGGAAGGCATGTCCTTCCGTTTCTTTTTGAGGACGCAACATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGAAGGTAACGc                                                                                                        >  1:647152/1‑134 (MQ=255)
                             cATGTCCTTCCGTTTCTTTTTGAGGACGCAACATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGAAGGTaa                                                                                                           <  2:75570/123‑1 (MQ=255)
                             cATGTCCTTCCGTTTCTTTTTGAGGACGCAACATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGAAGGTaa                                                                                                           >  1:75570/1‑123 (MQ=255)
                                               tttGAGGACGCAACATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATAATCTCGGGCCTGAAGGTAACGCTCGCCCTGGGACTCTCGTCCTGGGt                                                                               <  2:647152/133‑1 (MQ=255)
                                                ttGAGGACGCAACATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGAAGGTAACGCTCGCCCTGGGACTCTCGTCCTGGGTCa                                                                             >  2:743963/1‑134 (MQ=255)
                                                           aCATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGa                                                                                                                 >  2:759747/1‑87 (MQ=255)
                                                           aCATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGa                                                                                                                 <  1:759747/87‑1 (MQ=255)
                                                                               tGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGAAGGTAACGCTCGcc                                                                                                   >  1:420846/1‑81 (MQ=255)
                                                                               tGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGAAGGTAACGCTCGcc                                                                                                   <  2:420846/81‑1 (MQ=255)
                                                                               tGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGAAGGTAACGCTCGCCCTGGGACTCTCGTCCTGGGTCATCGCCCTGGTCATCGGTTCGGTGCTCGGCGt                                              >  2:1008007/1‑134 (MQ=255)
                                                                                 ggCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGAAGGTaa                                                                                                           >  2:251362/1‑71 (MQ=255)
                                                                                 ggCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGAAGGTaa                                                                                                           <  1:251362/71‑1 (MQ=255)
                                                                                      ttttCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTAGATGATCTCGGGCCTGAAGGTAACGCTCGCCCTGGGACTCTCGTCCTGGGTCATCGCCCTGGTCATCGGTTCGGTGCTCGGCGTGCTgcgc                                       <  1:743963/134‑1 (MQ=255)
                                                                                                                      tacctGGACTAGATGATCTCGGGCCTGAAGGTAACGCTCGCCCTGGGACTCTCGTCCTGGGTCATCGCCCTGGTCATCGGTTCGGTGCTCGGCGTGCTGCGCACCGTGCCCAACAAGTGGCTGGCGGGCATcgc       >  1:284702/1‑134 (MQ=255)
                                                                                                                       acctGGACTAGATGATCTCGGGCCTGAAGGTAACGCTCGCCCTGGGACTCTCGTCCTGGGTCATCGCCCTGGTCATCGGTTCGGTGCTCGGCGTGCTGCGCACCGTGCCCAACAAGTGGCTGGCGGGCATcgcc      >  2:258651/1‑134 (MQ=255)
                                                                                                                       acctGGACTAGATGATCTCGGGCCTGAAGGTAACGCTCGCCCTGGGACTCTCGTCCTGGGTCATCGCCCTGGTCATCGGTTCGGTGCTCGGCGTGCTGCGCACCGTGCCCAACAAGTGGCTGGCGGGCATcgcc      >  2:924962/1‑134 (MQ=255)
                                                                                                                           ggactagaTGATCTCGGGCCTGAAGGTAACGCTCGCCCTGGGACTCTCGTCCTGGGTCATCGCCCTGGTCATCGGTTCGGTGCTCGGCGTGCTGCGCACCGTGCCCAACAAGTGGCTGGCGGGCATCGCCGCCa  >  2:646517/1‑134 (MQ=255)
                                                                                                                                |                                                                                                                                
TGCCGTTGACAGCAGTGTGAAACGGAAGGCATGTCCTTCCGTTTCTTTTTGAGGACGCAACATGAACTACAACTGGCATTGGGCAGTTTTCCTCGAACAGGCCGCCCAGAACGAGACCTACCTGGACTGGATGATCTCGGGCCTGAAGGTAACGCTCGCCCTGGGACTCTCGTCCTGGGTCATCGCCCTGGTCATCGGTTCGGTGCTCGGCGTGCTGCGCACCGTGCCCAACAAGTGGCTGGCGGGCATCGCCGCCA  >  AM260479/500384‑500640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: