| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AssemblyC74_contig_1 | 65 | T→C | intergenic (–/‑527) | – / → rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Two‑component transcriptional response regulator, OmpR family |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AssemblyC74_contig_1 | 65 | 0 | T | C | 75.0% | 426.2 / inf | 633 | intergenic (–/‑527) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Two‑component transcriptional response regulator, OmpR family |
| Reads supporting (aligned to +/- strand): ref base T (91/67); new base C (258/216); total (350/283) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.00e-01 | |||||||||||
Only 100 of 635 total aligned reads displayed.
‑‑‑‑‑‑AGGAGTGTTTCCCGATTCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCA > AssemblyC74_contig_1/1‑198 | ttcatcaGGAGTGTTTCCCGATTCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCAtt > 2:1386387/7‑135 (MQ=17) tcatcaGGAGTGTTTCCCGATTCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCAttt < 2:159693/130‑1 (MQ=18) tcatcaGGAGTGTTTCCCGATTCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCAttt > 2:802183/6‑135 (MQ=18) ctcgagAGTCTTTCCCGATTCAATTTTGGCAGCCCTAGCAACATTTATATCATATCAGAGAGACAAGCGATTGTAAACACTTTATTAAAAG‑TTTTTT‑CGATTACGTTTTTCGAAATCTTTCGGCAACTCATTTAt < 2:1307327/130‑1 (MQ=11) atcaGGAGTGTTTCCCGATTCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTAt < 1:684252/132‑1 (MQ=21) atcaGGAGTGTTTCCCGATTCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTAt > 2:500686/4‑135 (MQ=21) ggAGTGTTTCCCGATTCGTTTTTGGCTGCTGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCAt > 2:2155223/1‑135 (MQ=11) ggAGTGTTTCCCGATTCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTATTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCAt > 1:864700/1‑134 (MQ=37) agAGTGTTTCCCGATTCATTTTTGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAAc < 2:3394936/123‑1 (MQ=11) agAGTGTTTCCCGATTCATTTTTGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCAt > 2:862920/2‑135 (MQ=11) agAGTGTTTCCCGATTCATTTTTGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCAt > 1:264041/2‑135 (MQ=11) agAGTGTTTCCCGATTCATTTTTGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCAt > 2:329346/2‑135 (MQ=11) agAGTGTTTCCCGATTCATTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAAc < 2:309176/122‑1 (MQ=11) agAGTGTTTCCCGATTCATTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCAt > 1:2483269/2‑134 (MQ=11) agAGTGTTTCCCGATTCATTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCAt > 1:3064278/2‑134 (MQ=11) gAGTGTTTCCCGATTCGTTTTTGGCTGCTGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCAt > 2:1840010/1‑134 (MQ=11) gAGTGTTTCCCGATTCATTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACt < 1:2866517/123‑1 (MQ=11) gAGTGTTTCCCGATTCATTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCAt > 1:1171604/1‑133 (MQ=11) gAGTGTTTCCCGATTCATTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCAt > 2:1520485/1‑133 (MQ=11) gtgtTTCCCGATTCATTTTTGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAAc > 2:2085105/1‑135 (MQ=11) gtTTCCCGATTCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACtt > 2:740509/1‑134 (MQ=37) gtTTCCCGATTCATTTTTGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGttttt > 2:412996/1‑102 (MQ=11) gtTTCCCGATTCATTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAGCTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATAATAACtt > 2:3230004/1‑134 (MQ=11) gtTTCCCGATTCATTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACtt > 1:1768357/1‑134 (MQ=11) tttCCCGATTCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTa < 2:3542741/134‑1 (MQ=37) tttCCCGATTCATTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTAt < 1:2049947/135‑1 (MQ=11) tCCCTATTCGTTTTTGGCTGCTGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTATTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTAt < 2:3148069/134‑1 (MQ=11) tCCCGATTCATTTTTGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGGAATCTTTCAGCAACTCATTTATCATAACTTAt < 1:2521556/134‑1 (MQ=11) cccGATTCGTTTTTGGCTGCTGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCg > 2:2041079/1‑135 (MQ=11) cccGATTCGTTTTTGGCTGCTGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCg > 1:3111523/1‑135 (MQ=11) cccGATTCATTTTTGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAG‑TTTTTTACGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCg > 1:136244/1‑135 (MQ=11) cccGATTCATTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGt > 1:915159/1‑135 (MQ=11) gATTCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTg > 1:1254709/1‑135 (MQ=37) ttCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGtttttt > 1:1012222/1‑135 (MQ=37) tcatttttGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGtt > 1:1108164/4‑135 (MQ=11) tCGTTTTTGGCTGCTGTAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGt < 1:3406976/134‑1 (MQ=11) tCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTa > 2:1434688/1‑135 (MQ=37) atttttGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATAGTTTGTTAt > 1:147994/2‑135 (MQ=11) tttttGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTAttt < 2:3417623/135‑1 (MQ=37) ttttGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTAttt < 1:3304433/135‑1 (MQ=11) tGGCTTCCGTAGCAACTTTTATATCATATCAGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTc > 1:2680873/1‑135 (MQ=11) tAGCAACTTTTATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACtttt < 2:915159/135‑1 (MQ=255) aCTTTTATATCATATAAGAGAGACACGTAATTGTCAAATCTTTTTTAAATG‑TTTTTT‑CGATTTCTTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTg < 2:70814/133‑1 (MQ=11) tttATATCATATCAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGtt < 1:1864664/135‑1 (MQ=255) atatcatatcAGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGtttt < 1:3231500/135‑1 (MQ=11) atcatatcaGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:641183/135‑1 (MQ=255) atcatatcaGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:2577383/135‑1 (MQ=255) atcatatcaGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:966927/135‑1 (MQ=255) atcatatcaGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:823702/135‑1 (MQ=255) atcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttt > 1:170584/1‑134 (MQ=11) atcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 2:3328561/135‑1 (MQ=255) atcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:2763430/135‑1 (MQ=255) atcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 2:2513146/135‑1 (MQ=255) tcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:1840010/135‑1 (MQ=11) tcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:33493/135‑1 (MQ=11) tcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:511860/135‑1 (MQ=11) tcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:1745266/135‑1 (MQ=11) tcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 2:3024464/135‑1 (MQ=11) tcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 2:551700/135‑1 (MQ=11) tcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 2:1988182/135‑1 (MQ=11) tcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttctt < 1:2988510/135‑1 (MQ=11) tcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTAGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:1981270/135‑1 (MQ=11) tcatatcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTATCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:1644983/135‑1 (MQ=11) tcatatcaGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:157681/135‑1 (MQ=11) tcatatcaGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:2129860/135‑1 (MQ=11) tcatatcaGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:218205/135‑1 (MQ=11) tcatatcaGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 1:575059/135‑1 (MQ=11) tcatatcaGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 2:222670/135‑1 (MQ=11) tcatatcaGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 2:2358015/135‑1 (MQ=11) tcaGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAg > 1:718269/1‑135 (MQ=255) caGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGa > 1:2756351/1‑135 (MQ=255) caGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGa > 1:3498956/1‑135 (MQ=255) caGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTGCCAGCAACTCATTTATCATAACTTATCGTTTGGTATGTGTCAAGAACTTTTTTGATGTATTTTTCGATAGa > 2:2938506/1‑135 (MQ=14) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAACTCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAg > 2:1162962/1‑135 (MQ=11) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 2:2560788/129‑1 (MQ=11) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt > 2:1561939/1‑129 (MQ=11) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAg > 1:1402267/1‑135 (MQ=11) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAg > 2:2823202/1‑135 (MQ=11) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAg > 1:3035387/1‑135 (MQ=11) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt < 2:1938638/128‑1 (MQ=255) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt > 1:1938638/1‑128 (MQ=255) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATata > 2:2316938/1‑133 (MQ=14) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATa < 2:1764257/133‑1 (MQ=255) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGa > 2:1205339/1‑135 (MQ=255) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGa > 2:2431454/1‑135 (MQ=255) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGa > 1:781795/1‑135 (MQ=255) caGAGAGACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGa > 2:2693920/1‑135 (MQ=255) caGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCATCAACTAATATATCATAAATTATCGTTTTTTATTTGTCAATAACTTTTTTGAAGTATTTTTCGATAg > 2:2991317/1‑135 (MQ=11) caGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGttttttt > 2:2759565/1‑129 (MQ=11) caGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAg > 2:655811/1‑135 (MQ=11) caGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAg < 1:2255517/135‑1 (MQ=11) caGAGAGACAAACGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAg > 1:2409748/1‑135 (MQ=11) caGAGAGACAAACGATTGTCAACTCTATTTTAAAAGTTTTTTT‑CGATTTCGTGTTTCGAAATCTTTCAGCAACTCATTTATCAAAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAg > 1:422858/1‑135 (MQ=11) agagagACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGaa < 2:2874893/135‑1 (MQ=255) agagagACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGaa < 1:3544505/135‑1 (MQ=255) agagagACAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGaa < 1:3173304/135‑1 (MQ=255) gagagaCAAGCGATTGTCAACTCTTTTTTAAAAGTTTTTTT‑CGATTTCGTTTTTCGAAATCTTTCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTg < 2:2621544/117‑1 (MQ=11) gagagaCAAGCGATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTTCGGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAAt > 2:1074447/1‑135 (MQ=255) cAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGAGTTCGTTTTTCGAAATCTTCCAGCAAc < 2:1878168/64‑1 (MQ=255) gTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTca < 2:1719996/135‑1 (MQ=255) | ‑‑‑‑‑‑AGGAGTGTTTCCCGATTCGTTTTTGGCTGCCGTAGCAACTTTTATATCATATCAGAGAGACAAGTAATTGTCAACTCTTTTTTAAAAG‑TTTTTT‑CGATTTCGTTTTTCGAAATCTTCCAGCAACTCATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCA > AssemblyC74_contig_1/1‑198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |