New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AssemblyC74_contig_28 1 =0 (0.000)381 (0.500) 107/258 0.0 100% intergenic (–/‑81) –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 –/hypothetical protein
?AssemblyC74_contig_45 = 1002 0 (0.000)intergenic (‑96/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– Integrase, catalytic region/–

Only 100 of 381 total aligned reads displayed.

CCTACAATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AssemblyC74_contig_28/134‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTATACCCATCTTACACCAAACGAGCTTGTAAT  <  AssemblyC74_contig_45/1002‑869
                                                                                                                                                                                                                                                                            
CCTACAATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATC                                                                                                                                       <  1:696642/135‑1
CCTACAATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATC                                                                                                                                       <  1:2014110/135‑1
  TACAATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGC                                                                                                                                     >  1:827137/1‑135
  TACAATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTGTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGC                                                                                                                                     >  2:879627/1‑135
    CAATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCG                                                                                                                                   >  1:986347/1‑135
      ATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTT                                                                                                                                 <  2:1428921/135‑1
      ATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTT                                                                                                                                 >  2:1235649/1‑135
      ATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTT                                                                                                                                 >  2:1645979/1‑135
      ATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTT                                                                                                                                 >  1:1556435/1‑135
      ATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTT                                                                                                                                 >  1:1464217/1‑135
      ATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTT                                                                                                                                 >  2:364062/1‑135
      ATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTT                                                                                                                                 >  2:754691/1‑135
       TAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTT                                                                                                                                >  2:1765929/1‑135
       TAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTT                                                                                                                                >  2:1984928/1‑135
       TAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTT                                                                                                                                >  2:2397764/1‑135
       TAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTT                                                                                                                                >  1:2488387/1‑135
       TAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGC                                                                                                                                     >  1:2189778/1‑130
       TAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGC                                                                                                                                     <  2:2189778/130‑1
       TAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCAATTGTTCATAAAAAATGTTTAATTTGTTACAAAAGAGATTATAACTAAGAAATTACTTATTTTTATTGATAGCCGTTT                                                                                                                                >  2:1552878/1‑135
           CAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATCACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTAT                                                                                                                            >  2:1475158/1‑135
            AACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATA                                                                                                                           >  1:2459752/1‑135
             ACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGC                                                                                                                                     <  2:1854814/124‑1
              CATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAAT                                                                                                                         >  1:48305/1‑135
                 CAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTA                                                                                                                       >  1:795268/1‑134
                 CAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTA                                                                                                                       >  2:1626615/1‑134
                 CAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTA                                                                                                                       >  2:566223/1‑134
                 CAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTA                                                                                                                       >  2:1347207/1‑134
                      CTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGA                                                                                                                  >  2:2114214/1‑134
                      CTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGA                                                                                                                  >  1:587906/1‑134
                           AAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAA                                                                                                            >  2:158065/1‑135
                           AAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAA                                                                                                            >  2:2025156/1‑135
                            AGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAATATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAAT                                                                                                           >  1:405817/1‑135
                            AGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAAT                                                                                                           >  1:2285242/1‑135
                             GCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATA                                                                                                          >  2:1115552/1‑135
                             GCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATA                                                                                                          <  1:1734466/135‑1
                                 ATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAA                                                                                                      >  1:2384119/1‑135
                                 ATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAA                                                                                                      >  2:2221311/1‑135
                                 ATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAA                                                                                                      >  2:1339387/1‑135
                                 ATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAA                                                                                                      >  2:249525/1‑135
                                    AATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGC                                                                                                   <  1:1504915/135‑1
                                    AATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGC                                                                                                   <  1:515487/135‑1
                                     ATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGGATAATTAAGCGAGACAAATAAAAAAGCC                                                                                                  >  1:271621/1‑135
                                     ATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCG                                                                                                                                      >  1:2244480/1‑99
                                      TCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCA                                                                                                 >  1:2419145/1‑135
                                          AATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTA                                                                                             >  1:260059/1‑135
                                            TTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATACTTAAGCGAGACAAATAAAAAAGCCATTTATG                                                                                           <  2:250936/135‑1
                                            TTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATG                                                                                           <  2:2250872/135‑1
                                                TTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTAC                                                                                       <  1:130955/135‑1
                                                  CATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACAC                                                                                     <  1:186470/135‑1
                                                    TAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTC                                                                                   <  2:182953/135‑1
                                                         TTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATT                                                                              <  2:191573/135‑1
                                                           CTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGT                                                                            <  2:77992/135‑1
                                                           CTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGT                                                                            <  1:1833867/135‑1
                                                                TTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATAC                                                                       <  2:1518887/135‑1
                                                                  ttTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCC                                                                     <  2:1729139/133‑1
                                                                    TTCATAAAATATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGC                                                                   <  2:1991875/135‑1
                                                                    TTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGC                                                                   <  2:2456122/135‑1
                                                                    TTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGC                                                                   <  2:828146/135‑1
                                                                    TTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGC                                                                   <  2:964098/135‑1
                                                                      CATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTA                                                                 <  1:1656495/135‑1
                                                                      CATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAA                                                                                                         <  2:672178/95‑1
                                                                        TAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAA                                                               <  1:1151029/135‑1
                                                                        TAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAA                                                               <  1:1991579/135‑1
                                                                        TAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAA                                                               <  2:2271664/135‑1
                                                                         AAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAG                                                              >  1:1679495/1‑135
                                                                          AAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGC                                                             <  1:866276/135‑1
                                                                           AAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCA                                                            >  1:1103756/1‑135
                                                                           AAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCA                                                            <  1:754691/135‑1
                                                                           AAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCA                                                            >  2:192231/1‑135
                                                                           AAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCA                                                            <  1:1536644/135‑1
                                                                                      TTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAG                                                 <  1:1492440/135‑1
                                                                                       TTGTTACAAAAGTGATTATAAAGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACACATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGT                                                <  2:543658/135‑1
                                                                                            ACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACA                                           <  1:2138692/135‑1
                                                                                            ACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACA                                           <  1:124036/135‑1
                                                                                            ACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACA                                           <  2:862251/135‑1
                                                                                              AAAAGTGATTATAACTAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATA                                         <  1:206478/135‑1
                                                                                              AAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAATAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAATGCATACAAGGAGAGTGAACATA                                         <  1:1928245/135‑1
                                                                                              AAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATA                                         <  1:1016836/135‑1
                                                                                              AAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATA                                         <  2:1679495/135‑1
                                                                                                 AGTGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAAT                                      <  1:2221311/135‑1
                                                                                                   TGATTATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAAT                                      >  1:122863/1‑133
                                                                                                       TATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATTATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTA                                                                           <  2:627385/92‑1
                                                                                                       TATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTA                                <  2:1309194/135‑1
                                                                                                       TATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTA                                <  1:1631753/135‑1
                                                                                                       TATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTA                                <  1:911169/135‑1
                                                                                                       TATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTA                                <  1:293664/135‑1
                                                                                                        ATAACGAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTAT                               <  2:1187666/135‑1
                                                                                                        ATAACGAAGAAATTACTTATTTTTATTGATCGCCGTGTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTAT                               <  2:2065199/135‑1
                                                                                                             GAAGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATG                                     <  1:1583260/124‑1
                                                                                                               AGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTATACCCATC                        >  1:1359166/1‑135
                                                                                                               AGAAATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTA                                >  2:1061401/1‑127
                                                                                                                  AATTACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTATACCCATCTTA                     >  1:1985017/1‑135
                                                                                                                      ACTTATTTTTATTGATCGCCGTTTTTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTATACCCATCTTACACC                 <  2:48314/135‑1
                                                                                                                      ACTTATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTATACCCATCTTACACC                 <  1:1339387/135‑1
                                                                                                                          ATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTATACCCATCTTACACCAAAC             <  2:27739/135‑1
                                                                                                                          ATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTATACCCATCTTACACCAAAC             <  1:2359812/135‑1
                                                                                                                          ATTTTTATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTATACCCATCTTACACCAAAC             <  2:2310452/135‑1
                                                                                                                               TATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTATACCCATCTTACACCAAACGAGCT        <  1:846907/135‑1
                                                                                                                               TATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAG                                                   <  1:65320/92‑1
                                                                                                                                ATTGATCGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTATACCCATCTTACACCAAACGAGCTT       >  2:599451/1‑135
                                                                                                                                                                                                                                                                            
CCTACAATAAACAACATCAAGCCTAATAAGCCAATTAATCTTAATTTTTTCATAAAATTCTCCTTTTGTTCATAAAAAATGTTTAATTTGTTACAAAAGTGATTATAACGAAGAAATTACTTATTTTTATTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AssemblyC74_contig_28/134‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGTTTGTATAATTAAGCGAGACAAATAAAAAAGCCATTTATGTTACACTCAAATTGTAATACCCGCTAAAGCATACAAGGAGAGTGAACATAAATGACTTATACCCATCTTACACCAAACGAGCTTGTAAT  <  AssemblyC74_contig_45/1002‑869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.