BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AssemblyC74_contig_1	443402 =	990 (3.440)	221 (0.850)	56/258	1.2	30.9%	intergenic (+531/–)	rasttk_feature_annotation_tool=annotate_proteins_si milarity/–	Conserved hypothetical protein ArsC related/–
*	?	AssemblyC74_contig_6	= 168934	0 (0.000)	221 (0.850)	56/258	1.2	30.9%	intergenic (+543/–)	rasttk_feature_annotation_tool=annotate_proteins_km er_v2/–	Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3)/–

Only 100 of 1251 total aligned reads displayed.

TGAGTTGCTGTAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGAGCTTAACAATCGT‑‑‑‑  >  AssemblyC74_contig_1/443268‑443529

   gTTGCTGAAAGATTTCGAAAAACGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTa                                                                                                                                    >  2:2119599/1‑134 (MQ=11)

     tGCTGGAAGATTTCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGGGAAAAACGAATCGGGAAACACTCCTGATGAAGTAGAcc                                                                                                                                <  1:2540587/135‑1 (MQ=11)

         gTAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTg                                                                                                                            >  2:32554/1‑135 (MQ=255)

          tAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGa                                                                                                                           <  2:1226067/135‑1 (MQ=255)

               tttCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACt                                                                                                                      >  2:1301393/1‑135 (MQ=255)

                ttCTAAAAACGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGTTTGTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACt                                                                                                                      <  1:2457596/135‑1 (MQ=14)

                ttCGAAAAACTAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGTTTGTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACt                                                                                                                      <  2:1264438/135‑1 (MQ=14)

                ttCGAAAAACTAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTATGATATGATTTAAACGTTGCTACTGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACt                                                                                                                      <  1:1723019/134‑1 (MQ=17)

                ttCGAAAAACGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACACTCGTTTGTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGATACACTCTCGATGAAGTAGACCTTTGAAAACt                                                                                                                      <  2:536491/135‑1 (MQ=14)

                ttCGAAAAACGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACACTCGTTTGTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACt                                                                                                                      <  1:1911047/135‑1 (MQ=14)

                ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACt                                                                                                                      <  1:1811869/134‑1 (MQ=255)

                ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACt                                                                                                                      <  2:231593/134‑1 (MQ=14)

                ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACt                                                                                                                      <  2:1927639/134‑1 (MQ=14)

                ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACt                                                                                                                      <  2:2550569/134‑1 (MQ=14)

                ttCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACt                                                                                                                      <  2:2044511/134‑1 (MQ=255)

                atatgataatcaagtcgctgctaatgagtggcaaagacgtttagaaaaaataaacaaagaagttgttgacattctcttctgaatctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACt                                                                                                                      >  1:658624‑M1/120‑135 (MQ=255)

                    aaaaaCGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGTTTGTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGa                                                                                                                           <  1:219384/126‑1 (MQ=14)

                    aaaaaCGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGTTTGTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAAc                                                                                                                  >  1:1064350/1‑135 (MQ=14)

                    aaaaaCGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAAc                                                                                                                  >  1:2100148/1‑135 (MQ=17)

                    aaaaaCGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACa                                                                                                                 >  1:120554/1‑135 (MQ=255)

                      aaaaGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACa                                                                                                                 <  1:602902/134‑1 (MQ=17)

                          gAAATCGAAAAAAAATTTTAAAAAAGTGTTTACAATCGCTTGTCTCTCTGATATTATATAATAGTTGCTACTGCTGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTa                                                                                                            <  2:1480234/135‑1 (MQ=17)

                           aagtcgctgctaatgagtggcaaagacgtttagaaaaaataaacaaagaagttgttgacattctcttctgaatctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACt                                                                                                                      <  2:1189834‑M1/16‑1 (MQ=255)

                             atcgtaaaaaaCTTTTAAAAAAGAGTTGACAATAGTTTGTCTCTCTGATATGATATTAAAGTTGCTACGTAATCCAAAAATGAATCGGGAAACACTATCGATGAAGTAGAGCTTTGAAAACTGAACAAAGTAAGa                                                                                                         <  1:47179/130‑1 (MQ=17)

                             atcgaaaaaaaCTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGa                                                                                                         <  1:826409/131‑1 (MQ=18)

                               tcgaaaaaaCTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACa                                                                                                       <  1:2395210/132‑1 (MQ=17)

                                 gaaaaaaCTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACaaa                                                                                                     <  2:412507/134‑1 (MQ=255)

                                  ataaacCTTTTAAAAAAGAGTTGACACTTCCTTGTCTCTCTGAGATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACATTTGAAAACTGAACAAAGTAAGACAAAc                                                                                                    <  2:1458839/133‑1 (MQ=18)

                                  aaaaatCTTTTAAAAAATAGTTGACAATTACTTGTCTCTCTGATATGATATAAACGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGTAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAAc                                                                                                    <  1:2050995/135‑1 (MQ=255)

                                   gctaatgagtggcaaagacgtttagaaaaaataaacaaagaagttgttgacattctcttctgaatctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAAc                                                                                                    >  1:1166027‑M1/101‑134 (MQ=255)

                                   aaaaaCTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAAc                                                                                                    <  1:71977/134‑1 (MQ=18)

                                   aaaaaCTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAAc                                                                                                    <  2:961943/134‑1 (MQ=18)

                                           ttAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATgtgt                                                                                           <  2:752106/135‑1 (MQ=21)

                                            tAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTa                                                                                          <  1:39421/135‑1 (MQ=255)

                                            tAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTa                                                                                          <  2:25908/135‑1 (MQ=255)

                                            tAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTa                                                                                          <  1:295538/135‑1 (MQ=255)

                                            tAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTa                                                                                          <  1:1141147/135‑1 (MQ=21)

                                               caaagacgtttagaaaaaataaacaaataagttgttgacattctcttctgaatctgataagattaaagagttgttgaaacaaaaagatTATACCTTTTAAAACTGAACAAAGTAATACAAACCAAATGTGtagtg                                                                                       <  1:2337437‑M1/47‑3 (MQ=255)

                                               caaagacgtttagaaaaaataaacaaagaagatgttgacattctcttctgaatctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTTAAAACTGAACAAAGTAAGACAAACCAAATGTGGAggg                                                                                       <  1:1579813‑M1/47‑1 (MQ=255)

                                                 aagacgtttagaaaaaataaacaaagaagttgttgacattctcttctgaatctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGc                                                                                      <  2:168403‑M1/48‑1 (MQ=255)

                                                      ttttagaaaaaataaacaaagaagttgttgacattctcttctgaatctgataagattaaagagtttttgaaacaaatagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTg                                                                                >  2:1814865‑M1/82‑135 (MQ=255)

                                                      gtttagaaaaaataaacaaagaagttgttgacattctcttctgaatctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTg                                                                                >  1:1289793‑M1/82‑135 (MQ=255)

                                                      gtttagaaaaaataaacaaagaagttgttgacattctcttctgaatctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTg                                                                                >  2:1726013‑M1/82‑135 (MQ=255)

                                                            aaaaaataaacaaagaagttgttgacattctcttctgaatctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGattcaa                                                                          <  2:2219275‑M1/60‑1 (MQ=255)

                                                             tcgcTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATTAAGTAGAACTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGattcaa                                                                          >  2:465302/4‑134 (MQ=25)

                                                              cgtttGTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGattcaatt                                                                        >  2:809733/4‑135 (MQ=37)

                                                                 ttGTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAAAGTGTAGGGCGTCTTGAttcaattcaa                                                                     >  1:555880/1‑135 (MQ=37)

                                                                   gTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGa                                                                   >  1:485295/1‑135 (MQ=255)

                                                                      tctctGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGacaa                                                                >  1:250418/1‑135 (MQ=255)

                                                                           gatatgatatAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGACTTGATTCAATTCAAGACaacaaac                                                           >  1:1619722/1‑135 (MQ=255)

                                                                           gatatgatatAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACaacaaac                                                           >  1:2423763/1‑135 (MQ=255)

                                                                                gatatAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttt                                                      <  2:249813/135‑1 (MQ=255)

                                                                                 atatAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAttttt                                                     >  1:263111/1‑135 (MQ=255)

                                                                                 atatAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAttttt                                                     >  1:1664305/1‑135 (MQ=255)

                                                                                    taAAAGTTGCTACGGCAGCAAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaac                                                  >  1:1341370/1‑132 (MQ=255)

                                                                                     aaaaGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaaca                                                 >  2:2263318/1‑131 (MQ=38)

                                                                                     aaaaGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAAc                                                 <  2:1871977/135‑1 (MQ=255)

                                                                                     aaaaGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACAtttttaaca                                                 <  2:2365297/135‑5 (MQ=255)

                                                                                     aaaaGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACAtttttaaca                                                 <  2:1622304/135‑5 (MQ=255)

                                                                                     aaaaGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaaca                                                 >  1:235998/1‑131 (MQ=255)

                                                                                     aaaaGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATGCAATTCAAGACAACAAACAtttttaaca                                                 >  2:721097/1‑131 (MQ=38)

                                                                                      attctcttctgaatctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAaacatttttaaca                                                 >  2:2433538‑M1/50‑130 (MQ=255)

                                                                                      attctcttctgaatctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTT‑AAcaa                                               >  1:1505612‑M1/50‑135 (MQ=255)

                                                                                      attctcttctgaaactgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGACCAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAaacatttttaaca                                                 >  2:1981417‑M1/50‑130 (MQ=255)

                                                                                      aaaGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAAcaa                                               <  1:1964451/135‑1 (MQ=38)

                                                                                      aaaGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCGAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACA‑TTTTTAAcaa                                               <  2:1762902/135‑1 (MQ=255)

                                                                                      aaaGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACA‑TTTTTAAcaa                                               <  2:86204/135‑1 (MQ=255)

                                                                                       aaGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACAtttt                                                      >  1:125374/1‑128 (MQ=255)

                                                                                         gTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGAcc                                                                                                                                <  2:1019146/52‑1 (MQ=14)

                                                                                         gTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTa                                                                                          >  2:1372600/1‑90 (MQ=37)

                                                                                          ttGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAAcaagca                                            >  2:2077783/1‑135 (MQ=255)

                                                                                           cttctgaatctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACa                                                                                                       <  1:1764660‑M1/31‑1 (MQ=255)

                                                                                               aCGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAat                                      >  2:1572804/1‑135 (MQ=255)

                                                                                               aCGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAACAAgcaagcaa                                       >  2:2172367/1‑135 (MQ=255)

                                                                                               aCGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAACAAgcaagcaa                                       >  1:1411383/1‑135 (MQ=255)

                                                                                               aCGGCAGCC‑AAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAata                                     >  1:1856627/1‑135 (MQ=255)

                                                                                                cGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCTAGACAACAAACA‑TTTTTAACAAGCAAGCAata                                     >  2:913424/1‑135 (MQ=255)

                                                                                                 ggaaGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACA‑TTTTTAACAAGCAAGCAatat                                    <  2:1144590/132‑1 (MQ=255)

                                                                                                   tctgataagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTT‑AACAAGCAAGCAATATGc                                  <  2:63788‑M1/99‑1 (MQ=255)

                                                                                                    aGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGCt                                 >  1:1548387/1‑135 (MQ=255)

                                                                                                     gCCAAAAATGAATCGGGAAACACTCTCGAAGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTATGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAAAATGCt                                 >  1:2280505/1‑134 (MQ=255)

                                                                                                         aagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTT‑AAcaa                                               <  2:1061857‑M1/86‑1 (MQ=255)

                                                                                                         aagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTT‑AACAAGCAAGCAATATGCTAGca                             <  1:780023‑M1/104‑1 (MQ=255)

                                                                                                         aagattaaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTT‑AACAAGCAAGCAATATGCTAGca                             <  2:1524881‑M1/104‑1 (MQ=255)

                                                                                                              taaagagttgttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTT‑AACAAGCAAGCAATATGCTAGcaaacaa                        >  1:879128‑M1/26‑134 (MQ=255)

                                                                                                                 tCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAACAAGCAAGCAATATGCTAGCAAACAAAtt                     <  1:2001325/135‑1 (MQ=255)

                                                                                                                   ggggAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTg                    >  2:67371/1‑134 (MQ=255)

                                                                                                                   gggaAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACA‑TTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTg                    >  1:2235059/1‑133 (MQ=255)

                                                                                                                   gggaAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTg                    >  2:783101/1‑133 (MQ=255)

                                                                                                                      aaaCACTCTCGATGAAGTAGAACTTTGAAAACTGAACAAAGTAAGACACACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGAGCtt               <  1:1466751/134‑1 (MQ=255)

                                                                                                                       aaCACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACA‑TTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGAGCtt               <  1:1007933/134‑1 (MQ=255)

                                                                                                                       aaCACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGAGCtt               <  1:2148853/134‑1 (MQ=255)

                                                                                                                       aaCACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGAGCtt               <  2:1407716/134‑1 (MQ=255)

                                                                                                                       aaCACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGAGCtt               <  1:336234/134‑1 (MQ=255)

                                                                                                                        ttgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTT‑AACAAGCAAGCAATATGCTAGCAAACAAATTGAGCTTaa             <  2:585784‑M1/120‑1 (MQ=255)

                                                                                                                        acacTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTATTGATTCAATTCAAGACAACAAACATTTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGAGCtt               <  2:1104621/134‑1 (MQ=255)

                                                                                                                         tgaaacaaaaagatTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTT‑AACAAGCAAGCAATATGCTAGCAAACAAATTGAGCTTAAc            <  2:2402142‑M1/121‑1 (MQ=255)

                                                                                                                                 atgaAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGAGCTTAACAATCGcaa    >  1:74305‑M1/1‑132 (MQ=255)

                                                                                                                                 atgaAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGGAGGGCGTCTTGATACAATTCAAGACAATAAACA‑TTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGAGCTTAACAATCGcaa    >  1:94459‑M1/1‑132 (MQ=255)

                                                                                                                                    aaGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGAAGGGCGTCTTGATTCAAATCAATAAAACAAACATTTTTTAACAAGCAAGCAATATGCTAGCAAACAAATAGAGCTAAAAAATCGtaata  >  1:428315/1‑131 (MQ=255)

TGAGTTGCTGTAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGAGCTTAACAATCGT‑‑‑‑  >  AssemblyC74_contig_1/443268‑443529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.