| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AssemblyC74_contig_40 | 1 = | 0 (0.000) | 624 (0.870) | 116/258 | 0.0 | 100% | intergenic (–/+180) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Cold shock protein of CSP family |
| ? | AssemblyC74_contig_45 | 1 = | 0 (0.000) | coding (906/906 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Integrase, catalytic region | |||||
Only 100 of 624 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAACGAACTACTCTAAATTGCTAGCAATAATTACGGTATCT > AssemblyC74_contig_40/1‑133 | attcaaacggactcctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccat > 2:1383777‑M1/135‑135 (MQ=255)attcaaacggactcctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccat > 2:1511276‑M1/135‑135 (MQ=255)attcaaacggactcctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccat < 2:2145807‑M1/1‑1 (MQ=255)attcaaacggactcctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccat < 1:1380936‑M1/1‑1 (MQ=255) tcaaacggactcctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTa > 2:1204861‑M1/133‑135 (MQ=255) tcaaacggactcctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTa < 1:30329‑M1/3‑1 (MQ=255) tcaaacggactcctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTa < 1:756289‑M1/3‑1 (MQ=255) caaacggactcctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAg > 1:554530‑M1/132‑135 (MQ=255) acggattcctccgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatttcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAg < 1:480251‑M1/7‑1 (MQ=255) ggactcctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGtt > 2:1868269‑M1/127‑135 (MQ=255) cctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGttttttt < 2:1234174‑M1/14‑1 (MQ=255) cctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGttttttt < 2:261312‑M1/14‑1 (MQ=255) cctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGttttttt < 1:1745748‑M1/14‑1 (MQ=255) cctacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccaaatccctagaaaatcactaaattaccaaacaccaTTAGAAGttttttt < 2:1306557‑M1/14‑1 (MQ=255) ctccgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTg > 2:297927‑M1/121‑135 (MQ=255) tacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaactccaTTAGAAGTTTTTTTGa < 2:1591075‑M1/16‑1 (MQ=255) tacgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGa < 2:221490‑M1/16‑1 (MQ=255) cgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactcaattaccaaacaccaTTAGAAGTTTTTTTGAGt < 1:1501398‑M1/18‑1 (MQ=255) cgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGt < 2:1117628‑M1/18‑1 (MQ=255) cgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGt < 2:2110159‑M1/18‑1 (MQ=255) cgaaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGt < 2:1359099‑M1/18‑1 (MQ=255) aaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTa < 2:1839559‑M1/20‑1 (MQ=255) aaaagatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTa < 1:1222392‑M1/20‑1 (MQ=255) agatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcacgaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGt < 1:649818‑M1/23‑1 (MQ=255) gatggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTa < 1:1297114‑M1/24‑1 (MQ=255) tggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTaaa < 2:203734‑M1/26‑1 (MQ=255) tggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTaaa < 1:2466262‑M1/26‑1 (MQ=255) tggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTaaa < 1:1456029‑M1/26‑1 (MQ=255) tggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTaaa < 1:1973318‑M1/26‑1 (MQ=255) tgactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 2:2424398‑M1/109‑135 (MQ=255) ggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaattcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 2:1333900‑M1/109‑135 (MQ=255) ggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 1:2293983‑M1/109‑135 (MQ=255) ggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 1:1965423‑M1/109‑135 (MQ=255) ggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 1:1839559‑M1/109‑135 (MQ=255) ggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 2:1918143‑M1/109‑135 (MQ=255) ggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 1:1645122‑M1/109‑135 (MQ=255) ggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 1:259503‑M1/109‑135 (MQ=255) ggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 1:1408003‑M1/109‑135 (MQ=255) ggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 2:2462259‑M1/109‑135 (MQ=255) ggactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 2:240204‑M1/109‑135 (MQ=255) gactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagcaaatcacaaaattaccaaacaccaTTAGAAGTTTTGTTGAGTTACGTAAATg < 2:314937‑M1/28‑1 (MQ=255) gactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt < 2:585731‑M1/27‑1 (MQ=255) gactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATg < 1:691273‑M1/28‑1 (MQ=255) gactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATg < 1:1002707‑M1/28‑1 (MQ=255) gactaccaaaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATg < 2:696082‑M1/28‑1 (MQ=255) aaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGttt < 2:874856‑M1/36‑1 (MQ=255) aaagaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAGGGAAAGttt < 2:1024413‑M1/36‑1 (MQ=255) gaaatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGtttt < 2:1279747‑M1/37‑1 (MQ=255) aatggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGtct < 1:959737‑M1/41‑1 (MQ=255) atggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGtct < 1:1259047‑M1/41‑1 (MQ=255) atggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGtc > 2:77630‑M1/94‑133 (MQ=255) ggaattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGc < 1:2421018‑M1/44‑1 (MQ=255) aattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCtt < 2:1458914‑M1/46‑1 (MQ=255) aattcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCtt < 2:474992‑M1/46‑1 (MQ=255) aattcaaccaagtcaatcaaggattcatatcaaccgttgcgtacaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCtt < 2:716097‑M1/46‑1 (MQ=255) attcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCtt > 1:2322534‑M1/89‑134 (MQ=255) ttcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTa > 1:1183842‑M1/88‑134 (MQ=255) ttcaaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTa > 1:2540746‑M1/88‑134 (MQ=255) aaccaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAAttt < 1:885963‑M1/51‑1 (MQ=255) accaagtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTg > 1:2502369‑M1/84‑135 (MQ=255) ccaagtcaatcaaggattcatatcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaaaacaaTTAGAAGTTGTTTTGAGTTACTTAAATGGAAATTTTTGTCTCGCTTAATTtgt < 1:2366467‑M1/53‑2 (MQ=255) gtcaatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACaaa > 2:51814‑M1/79‑135 (MQ=255) caatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAaata < 1:991170‑M1/59‑1 (MQ=255) caatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAaata < 1:212941‑M1/59‑1 (MQ=255) caatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAaata < 2:2507087‑M1/59‑1 (MQ=255) caatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAaata < 1:1914245‑M1/59‑1 (MQ=255) caatcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAaata < 2:648993‑M1/59‑1 (MQ=255) atcaaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAaataat > 2:1701374‑M1/75‑135 (MQ=255) caaggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAaataatag > 1:1689983‑M1/73‑134 (MQ=255) aggattcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGAcaaataatagta > 2:1162772‑M1/71‑132 (MQ=255) ttcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTtgacaaataatagattaa > 1:2032523‑M1/67‑128 (MQ=255) tcatctcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCtt > 1:399819‑M1/66‑111 (MQ=255) tcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTa < 1:2058558‑M1/20‑1 (MQ=255) tcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTtgacaaataatagaataa < 1:1340485‑M1/68‑7 (MQ=255) tcatccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAAtt‑tt > 1:601498‑M1/61‑135 (MQ=255) catccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacacccTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTa > 1:2099133‑M1/60‑135 (MQ=255) catccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacacccTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTa > 1:451760‑M1/60‑135 (MQ=255) tccgttgcgtccaaaagaaaccatctccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTAtt > 2:1739638‑M1/58‑135 (MQ=255) tccgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTAtt > 1:800567‑M1/58‑135 (MQ=255) cgttgcgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTAtt < 1:186517‑M1/78‑1 (MQ=255) cgtccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATAGATTAAAATAATTATtatttta < 2:44717‑M1/84‑3 (MQ=255) tccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAAt > 2:960817‑M1/49‑75 (MQ=255) ccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATAGATTAAAATAAttattattttaatca < 1:1707922‑M1/88‑7 (MQ=255) ccaaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTaa < 2:1986159‑M1/88‑1 (MQ=255) aaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAAtt < 1:1081711‑M1/90‑1 (MQ=255) aaaagaaaccatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAAtt < 1:220290‑M1/90‑1 (MQ=255) accatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAAc > 2:1789585‑M1/39‑134 (MQ=255) accatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAAc > 2:1404697‑M1/39‑134 (MQ=255) accatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAAc > 1:113520‑M1/39‑134 (MQ=255) accatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAAc > 1:346924‑M1/39‑134 (MQ=255) accatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAAc > 1:2252143‑M1/39‑134 (MQ=255) accatatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAAc > 2:2289968‑M1/39‑134 (MQ=255) catatccctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAACGaa > 1:2162951‑M1/37‑135 (MQ=255) cctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAACGAACTActc < 1:1793368‑M1/105‑1 (MQ=255) cctagaaaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAACGAACTActc < 2:1037356‑M1/105‑1 (MQ=255) aaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAaata > 2:81548‑M1/25‑83 (MQ=255) aaatcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAACGAACTACTCTAAAt < 2:936148‑M1/110‑1 (MQ=255) tcactaaattaccaaacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAACGAACTACTCTAAATTGCt > 1:10330‑M1/22‑135 (MQ=255) taccaaaccccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGGTTTGTCTCGCTTACTTTGACAAAAAATA‑‑TTATAATAATT‑TTATGTGCTCCGTAAATAGTAACGAACTACTCTAAATTGCTCGCaataat < 2:379071‑M1/123‑1 (MQ=255) aacaccaTTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAACGAACTACTCTAAATTGCTAGCAATAATTACgg < 1:157767‑M1/128‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGAAGTTTTTTTGAGTTACGTAAATGGAAAGTTTTGTCTCGCTTAATTTGACAAATAATA‑‑TTATAATAATT‑TTATTTGCTCCTTAATTAGTAACGAACTACTCTAAATTGCTAGCAATAATTACGGTATCT > AssemblyC74_contig_40/1‑133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |