| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AssemblyC74_contig_1 | 443,385 | G→A | intergenic (+514/–) | rasttk_feature_annotation_tool=annotate_proteins_si milarity → / – | Conserved hypothetical protein ArsC related/– |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AssemblyC74_contig_1 | 443,385 | 0 | G | A | 76.1% | 1369.5 / inf | 943 | intergenic (+514/–) | rasttk_feature_annotation_tool=annotate_proteins_si milarity/– | Conserved hypothetical protein ArsC related/– |
| Reads supporting (aligned to +/- strand): ref base G (91/134); new base A (287/430); total (378/565) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 958 total aligned reads displayed.
AAGTTATGATAAATGAGTTGCTGTAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGA > AssemblyC74_contig_1/443255‑443516 | ttATGATAAATGAGTTGCTGTAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAacac > 2:2347420/1‑133 (MQ=37) aaTGAGTTGCTGTAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGaa < 1:2101518/135‑1 (MQ=255) gAGTTGCTGTAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTa > 2:832875/1‑135 (MQ=255) gAGTTGCTGAAAGATTTCGAAAAACGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGt < 2:603872/135‑1 (MQ=11) gTTGCTGTAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAg > 2:512512/1‑134 (MQ=255) ccgaaaGATTTCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCtt > 1:1077051/5‑135 (MQ=11) ccgaaaGATTTCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCtt > 1:1397226/5‑135 (MQ=11) cTGTAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCtt > 1:2205326/1‑135 (MQ=255) cTGGAATATTTCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCtt > 2:963590/1‑135 (MQ=255) cTGAAAGATTTCGAAAAACGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGTTTGTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCt > 1:1695014/1‑135 (MQ=11) tAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGa < 2:2028782/135‑1 (MQ=255) aGATTTCGAAAAACGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGaa > 1:944809/1‑135 (MQ=14) ttCGAAAAACGAAATCGAAAAAAACTTTTAAACAAGAGTTGACAATCGTTTGTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACt < 2:2304771/135‑1 (MQ=14) ttCGAAAAACGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACt < 2:352675/135‑1 (MQ=14) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACt < 1:47441/134‑1 (MQ=255) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACt < 1:2253280/134‑1 (MQ=255) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACt < 1:2352142/134‑1 (MQ=255) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACt < 1:2471327/134‑1 (MQ=255) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACt < 2:2385279/134‑1 (MQ=255) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACt < 1:1877435/134‑1 (MQ=255) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACt < 2:796196/134‑1 (MQ=255) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACt < 2:138163/134‑1 (MQ=255) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACt < 1:399119/134‑1 (MQ=14) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACt < 2:1755002/134‑1 (MQ=14) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACt < 2:1077051/134‑1 (MQ=14) ttCGAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACt < 1:2296325/134‑1 (MQ=14) ttCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACt < 1:64933/134‑1 (MQ=255) ttCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACt < 1:832875/134‑1 (MQ=255) gAAAAACGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAAc > 1:197239/1‑135 (MQ=14) aaaaaCGAAATCGAAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGt > 1:1752526/1‑116 (MQ=11) aaaaaCGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACa > 1:30259/1‑135 (MQ=14) aaaaaCGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACa > 1:725862/1‑135 (MQ=255) aaaaCGAAATC‑GAAAAAACTTTTAAAAAAGAGTTGACCATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACaa > 2:1132578/1‑135 (MQ=255) cGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTa < 2:2569104/135‑1 (MQ=255) aatcgaaaaaaaCTTTTAAAAAAGAGTTGACAATCGTTTGTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTaa > 2:2418825/6‑134 (MQ=17) atctaaaaaaaaTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGa < 2:872782/131‑1 (MQ=18) gaaaaaaCTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACaaa < 1:2384024/134‑1 (MQ=255) gaaaaaaCTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACaaa < 1:2670/134‑1 (MQ=18) aaaaaaaCTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACaaa < 2:725862/135‑1 (MQ=255) aaaaaaCTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAAc < 2:2110997/135‑1 (MQ=18) aaaaaCTTTTAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAAc < 1:1563874/134‑1 (MQ=18) tAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAACACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTa < 1:2052145/135‑1 (MQ=255) tAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTa < 1:885888/135‑1 (MQ=21) tAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTa < 1:1141147/135‑1 (MQ=21) tAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTa < 2:288563/135‑1 (MQ=21) tAAAAAAGAGTTGACAATCGCTTGTCTCTCTGATATGATATAAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTa < 2:1864532/135‑1 (MQ=21) ttGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCt < 2:2533937/133‑1 (MQ=255) gACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGACCAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTg < 2:1470000/133‑1 (MQ=255) gACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTg < 2:1554745/133‑1 (MQ=255) gACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTg < 2:1677160/133‑1 (MQ=255) gTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGa > 1:485295/1‑135 (MQ=255) gTCTCTCTGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGa > 2:1704623/1‑135 (MQ=37) tctctGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGacaa > 1:759207/1‑135 (MQ=255) tctctGATATGATATAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGacaa < 1:535469/135‑1 (MQ=37) gatatgatatAAAATTTTCTACGGCAGCCAAAAATTAATCGGGAAACACTCAAGATGAAGTAGACCATTGAAAACTGAACAAAGTAAGACAAAACAAAATTGTAGGGCGTCTTGATTAAAATAAAAACaaaaaaa > 2:1290334/1‑134 (MQ=255) atgatatAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTa > 1:1605840/1‑83 (MQ=255) gatatAAAAGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACAtttt < 2:2177642/135‑1 (MQ=38) ataAAAGTTGCTACATCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAttttta < 1:782284/134‑2 (MQ=255) ataAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaa > 2:2217969/1‑133 (MQ=255) taAAAGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaac > 2:1339170/1‑132 (MQ=38) taAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTaa > 2:2255620/1‑135 (MQ=255) taAAAGTTGCTACGGCAGCAAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaac > 1:1341370/1‑132 (MQ=255) taAAAGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaac > 2:1919739/1‑132 (MQ=255) aaaaGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaaca > 2:443938/1‑131 (MQ=38) aaaaGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaaca > 2:1512578/1‑131 (MQ=38) aaaaGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaaca > 2:2481490/1‑131 (MQ=38) aaaaGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaaca < 1:2509287/135‑5 (MQ=255) aaaaGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaaca > 1:2411526/1‑131 (MQ=255) aaaaGTTGCTACGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCGTGATTCAATTCAAGACAACAAACAtttttaaca > 1:1012187/1‑131 (MQ=255) aaaaGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTg > 1:146107/1‑104 (MQ=255) aaaaGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACAtttttaaca > 1:1252450/1‑131 (MQ=255) aaaaGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACAtttttaaca < 1:431878/135‑5 (MQ=255) aaaaGTTGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACAtttttaaca > 1:1835748/1‑131 (MQ=255) aaaGTTGCTACGGCAGACAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAAcaa < 1:1282457/135‑1 (MQ=255) aaaGTTGCTACGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTAAATTCAAGACAATAAACA‑TTTTTAAcaa < 2:20743/135‑1 (MQ=255) aaGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAAca > 2:117400/1‑134 (MQ=255) aGTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAAcaagc < 1:1628971/135‑1 (MQ=39) gTTGCTACGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGAcc < 2:1019146/52‑1 (MQ=14) ttGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACt > 2:1209493/1‑61 (MQ=21) ttGCTACAGCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACt < 1:1209493/61‑1 (MQ=21) acagCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTATACCTTTGAACACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCGTGATTCAATTCAAGTCCCCAAACA‑TTGTTAACAAGCAAGCAat > 2:1803872/4‑135 (MQ=255) acagCAGCCAAAAACGAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAat > 1:710610/4‑135 (MQ=255) aCGGCAGCCAAAAATGGATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAat > 1:192471/1‑135 (MQ=255) aCGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAgcaagcaaa > 1:1508737/1‑134 (MQ=255) aCGGCAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAat > 1:2010812/1‑135 (MQ=255) aCGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAACAAgcaagcaa > 1:2549255/1‑135 (MQ=255) aCGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCGTTGAAAACAGAACAAAGTATGACAAACCAAATGTGTAGGGCGTCTTGAGTCACTTCAAGACAACAAACATTTGTTAACAAgctagcaa > 1:1163971/1‑135 (MQ=255) aCGGCAGCCAAAAACGAATCGGGAAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAat > 2:1614571/1‑135 (MQ=255) aCGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACA‑TTTTTAACAAGCAAGCAat > 2:1441998/1‑135 (MQ=255) aCGGAAGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGGAGGGCGTCTTGATTCAATTCAAGACACTAAACA‑TTTTTAACAAGCAAGCAat > 1:583324/1‑135 (MQ=255) aGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGc < 1:1778716/134‑1 (MQ=255) aGCCAAAAATGAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGc < 2:1251985/134‑1 (MQ=255) gCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAACAAGCAAGCAATATGc < 2:559900/134‑1 (MQ=255) aatgAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGCTAGcaaac < 1:353915/132‑1 (MQ=255) aatgAATCGGGAAACAATCTAGATGAAGTAGACCTTTGAAAACTGAACATAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAATAAACA‑TTTTTAACAAGCAAGCAATATGCTAGcaaac < 2:769468/132‑1 (MQ=255) gAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAACAAGCAAGCAATATGCTAGcaaacaa < 2:921359/135‑1 (MQ=255) gAATCGGGAAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGCTAGcaaacaaa < 2:197239/135‑1 (MQ=255) gAATCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGCTAGcaaacaaa > 1:2436598/1‑135 (MQ=255) aTCGGGAAACACTCCCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTTTTAACAAGCAAGCAATATGCTAGCAAACAAAtt > 2:676522/1‑135 (MQ=255) gggaAACACTCTCGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACA‑TTGTTAACAAGCAAGCAATATGCTAGCAAACAAATTg > 1:2162190/1‑133 (MQ=255) | AAGTTATGATAAATGAGTTGCTGTAAGATTTCGAAAAACGAAATC‑AAAAAAACTTTTAAAAAAGAGTTGACAATTACTTGTCTCTCTGATATGATATAAAAGTTGCTACGGCAGCCAAAAACGAATCGGGGAACACTCCTGATGAAGTAGACCTTTGAAAACTGAACAAAGTAAGACAAACCAAATGTGTAGGGCGTCTTGATTCAATTCAAGACAACAAACATTTTTTAACAAGCAAGCAATATGCTAGCAAACAAATTGA > AssemblyC74_contig_1/443255‑443516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |