Predicted mutation
evidence seq id position mutation annotation gene description
RA AssemblyC74_contig_12 59,248 C→T A30A (GCG→GCA rasttk_feature_annotation_tool=annotate_proteins_km er_v2 ← Putative peptidoglycan bound protein (LPXTG motif) Lmo2178 homolog

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AssemblyC74_contig_1259,2480CT98.9% 588.9 / NA 184A30A (GCG→GCArasttk_feature_annotation_tool=annotate_proteins_km er_v2Putative peptidoglycan bound protein (LPXTG motif) Lmo2178 homolog
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (81/101);  minor base A (2/0);  total (83/101)
Fisher's exact test for biased strand distribution p-value = 2.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 185 total aligned reads displayed.

TTTCTTTCGTCAATTCTACCACCGCTGTCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCCAATTCATACCCCGTTGGCGCTTGGGTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATCGCCAGTTTTCCATCTGCTCCTGTGGTTAGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACTGCAGAACGGTTCCATTGGCATCTTGTAACTCAAAAACAGCTCCTTGCAGGAC  >  AssemblyC74_contig_12/59115‑59337
                                                                                                                                     |                                                                                                                                
tgtctctcGTCCCTTCTAGAACCTCTGTCTGTGTTCTTTCGATCTATCCCCAGATTGGTTTATGATACACTTCATACCCCGTTGGCGCTTGTGTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATc                                                                                                                                  <  2:511502/132‑1 (MQ=9)
 ttctttcGTTAATTCTACCACCGCTGTCTGACTTCTTTCGAAATCAAACTCGATTGGTGTCGAATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGc                                                                                                                                >  1:1009477/1‑135 (MQ=21)
  tctttcGTCAATTCTACCACCGCTGTCTGACTTCTTTCGATCAAAAACAAGATACGATTCGCACGAAATTCATAACCTATAGAAGAATGGGTTTCAACAAGCAGTTATGATCGTGGTGCTAAACCGTCAATTGcc                                                                                                                               >  2:1043240/1‑135 (MQ=255)
        gTCAATTCTACCACCGCTGTCTTACTTCTTTCGATCTCAAACTCGATTGTTGTCGCATCAAATTCATACCCTATTTGCGCTTGAGTTTCTACAAGCTGATATGCTCCTGGTGCAAAAAAGTCAATTGCCAGtttt                                                                                                                         >  2:43616/1‑135 (MQ=21)
           aagtCTACCACCGCTGTCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTcc                                                                                                                       <  1:824329/131‑1 (MQ=18)
            aTTCTACCACCGCTGTCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATCCCCTTTTGGCGCTTGATTTTCTTCCAGAGGTTATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAt                                                                                                                     <  1:2018707/135‑1 (MQ=255)
                 accaccGCTGTCTGACTACTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCCTACACTATTGTCTCGTGTGTTTGTACAAGCTGATATGCTACTGGTGCTAAACCGTCAATTGCCAGTTTTCCAtcttct                                                                                                                <  1:758832/135‑1 (MQ=255)
                          gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                       <  1:1371304/135‑1 (MQ=17)
                          gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                       <  1:2060708/135‑1 (MQ=17)
                          gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                       <  2:551006/135‑1 (MQ=17)
                          gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGtt                                                                                                       <  2:2565183/135‑1 (MQ=17)
                           tCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCAtcttct                                                                                                                <  1:2349845/125‑1 (MQ=17)
                           tCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTa                                                                                                      >  1:7588/1‑135 (MQ=17)
                             tGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaa                                                                                                    <  1:2530717‑M1/135‑3 (MQ=255)
                             tGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAa                                                                                                     >  2:2424407‑M1/1‑133 (MQ=255)
                              gACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAc                                                                                                   >  2:2189678/1‑135 (MQ=14)
                              gACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCGTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAc                                                                                                   >  1:1156195/1‑135 (MQ=14)
                                cttcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGGTTGAGTGTCTACCAGCTGATATGCACCTGTTGCTAAACCGTCCATTGCCACTTTCCCATCTTCTCATGTAGTTAAAccg                                                                                                 >  2:2024618/1‑134 (MQ=255)
                                cttcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccg                                                                                                 >  2:1712469/1‑134 (MQ=14)
                                  tcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTGTCCATCTTCTCCTGTAGTTAGAccggt                                                                                               <  2:818000/135‑4 (MQ=14)
                                  tcttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAccggt                                                                                               <  2:2472434/135‑4 (MQ=14)
                                   cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                              >  1:198786/1‑131 (MQ=17)
                                   cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                              <  2:717801/135‑5 (MQ=14)
                                   cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                              <  2:2054431/135‑5 (MQ=14)
                                   cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                              <  2:86331/135‑5 (MQ=14)
                                   cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAAAccggtt                                                                                              <  1:1526635/135‑5 (MQ=14)
                                   cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAAAccggtt                                                                                              <  2:1809209/135‑5 (MQ=14)
                                   cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAAAccggtt                                                                                              <  2:1288295/135‑5 (MQ=14)
                                   cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCGTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                              >  1:624298/1‑131 (MQ=17)
                                   cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATGGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                              <  1:2141811/135‑5 (MQ=14)
                                   cttTCGATCTCAAACTCGATTGGTGTCGCAGCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGtt                                                                                                       >  2:1390447/1‑126 (MQ=14)
                                   cttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCCATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                              >  2:1236022/1‑131 (MQ=14)
                                   cttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTa                                                                                                      >  2:11415/1‑127 (MQ=14)
                                   cttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                              <  2:2142726/135‑5 (MQ=14)
                                   cttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                              <  1:1373381/135‑5 (MQ=14)
                                      tCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAt                                                                                                                     >  2:2393120/1‑109 (MQ=14)
                                        gATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAtcttct                                                                                                                <  1:522853/112‑1 (MQ=14)
                                                 cTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTcc                                                                                                                       >  1:1054692/1‑96 (MQ=255)
                                                 cTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTcc                                                                                                                       <  2:1054692/96‑1 (MQ=255)
                                                            tCGCATCTAATTCATACCCTATTGGCGCTTGCGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttc                                                                      <  1:1626754‑M1/134‑33 (MQ=255)
                                                                                    gcgcTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAtcttct                                                                                                                >  2:1857063/1‑68 (MQ=11)
                                                                                            gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                      >  1:1758324‑M1/1‑70 (MQ=255)
                                                                                            gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                               <  1:578994‑M1/125‑56 (MQ=255)
                                                                                            gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                               >  2:578994‑M1/1‑70 (MQ=255)
                                                                                            gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaa                                                         >  1:1615409‑M1/1‑70 (MQ=255)
                                                                                             tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                     <  2:1890863‑M1/134‑66 (MQ=255)
                                                                                             tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                     <  1:2387921‑M1/134‑66 (MQ=255)
                                                                                             tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                     <  2:274212‑M1/134‑66 (MQ=255)
                                                                                              ttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcac                                    <  1:2082038‑M1/134‑67 (MQ=255)
                                                                                               tCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcac                                    <  1:2177841‑M1/133‑67 (MQ=255)
                                                                                                        tGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaagga                                          >  2:1181517‑M1/1‑58 (MQ=255)
                                                                                                         gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                           <  2:518621‑M1/126‑76 (MQ=255)
                                                                                                         gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                           <  2:18824‑M1/126‑76 (MQ=255)
                                                                                                          atatgctcctgGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagc                       >  2:977574‑M1/6‑56 (MQ=255)
                                                                                                          atatgctcctgGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagc                       >  1:2419886‑M1/6‑56 (MQ=255)
                                                                                                          atatgctcctgGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaaaagctacttgaaggacttcaccacagccttcagc                       >  2:393142‑M1/6‑56 (MQ=255)
                                                                                                          atatgctcctgGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcgggtctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagc                       >  1:358813‑M1/6‑56 (MQ=255)
                                                                                                           tatgctcctGGTGATATACCGTCAATTGACAGTTTTCCATCTTCTCCTGTAGTTAatccggtttgtagcgtttctccttctcggttctgtaactcaataacagctccttgaatgacttcaccactgccttcagca                      <  1:686828‑M1/131‑81 (MQ=255)
                                                                                                            atgctccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagca                      <  2:655301‑M1/131‑81 (MQ=255)
                                                                                                                 ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCCTCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  2:1220640‑M1/134‑86 (MQ=255)
                                                                                                                 ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  2:38313‑M1/134‑86 (MQ=255)
                                                                                                                 ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  2:603483‑M1/134‑86 (MQ=255)
                                                                                                                 ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  1:943617‑M1/134‑86 (MQ=255)
                                                                                                                 ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  1:1394651‑M1/134‑86 (MQ=255)
                                                                                                                 ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  1:381030‑M1/134‑86 (MQ=255)
                                                                                                                 ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  1:412324‑M1/134‑86 (MQ=255)
                                                                                                                 ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  1:426529‑M1/134‑86 (MQ=255)
                                                                                                                 ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTCAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  2:2216475‑M1/134‑86 (MQ=255)
                                                                                                                    ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt             >  2:656623‑M1/1‑46 (MQ=255)
                                                                                                                    ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt             >  1:1532122‑M1/1‑46 (MQ=255)
                                                                                                                    ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt             >  1:752347‑M1/1‑46 (MQ=255)
                                                                                                                     gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAcaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta            <  2:429685‑M1/135‑91 (MQ=255)
                                                                                                                     gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta            <  1:388662‑M1/135‑91 (MQ=255)
                                                                                                                     gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta            <  1:101199‑M1/135‑91 (MQ=255)
                                                                                                                     gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta            <  2:2339669‑M1/135‑91 (MQ=255)
                                                                                                                       gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag           >  1:1191563‑M1/1‑43 (MQ=255)
                                                                                                                       gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag           >  2:1192135‑M1/1‑43 (MQ=255)
                                                                                                                       gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag           >  1:1448782‑M1/1‑43 (MQ=255)
                                                                                                                       gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag           <  1:1848049‑M1/134‑92 (MQ=255)
                                                                                                                       gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag           >  1:2365980‑M1/1‑43 (MQ=255)
                                                                                                                       gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag           >  2:278770‑M1/1‑43 (MQ=255)
                                                                                                                       gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag           >  1:2489965‑M1/1‑43 (MQ=255)
                                                                                                                       gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcct                                                 >  1:276159‑M1/1‑43 (MQ=255)
                                                                                                                          aaaccgtcAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttca       <  1:1086427‑M1/132‑96 (MQ=255)
                                                                                                                          aaaccgtcAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttca       <  1:2238969‑M1/132‑96 (MQ=255)
                                                                                                                            accgTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaa      >  1:485892‑M1/2‑38 (MQ=255)
                                                                                                                             ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaac     >  1:709872‑M1/1‑37 (MQ=255)
                                                                                                                             ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaac     >  1:554262‑M1/1‑37 (MQ=255)
                                                                                                                             ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaac     >  2:1350731‑M1/1‑37 (MQ=255)
                                                                                                                              cGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac   <  1:1718938‑M1/135‑100 (MQ=255)
                                                                                                                              cGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac   <  1:1570707‑M1/135‑100 (MQ=255)
                                                                                                                              cGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac   <  2:2503946‑M1/135‑100 (MQ=255)
                                                                                                                              cGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctcattctcggttctgtaactcaaaaacagctccttgaagtacttcaccactgacttcagcatgtttaattagttcaacac   >  1:692586‑M1/1‑36 (MQ=255)
                                                                                                                               gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaacaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac   >  2:1083219‑M1/1‑35 (MQ=255)
                                                                                                                               gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacacc  <  2:256510‑M1/135‑101 (MQ=255)
                                                                                                                               gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacacc  <  2:2233353‑M1/135‑101 (MQ=255)
                                                                                                                               gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac   >  1:857150‑M1/1‑35 (MQ=255)
                                                                                                                               gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac   >  2:1083191‑M1/1‑35 (MQ=255)
                                                                                                                               gTCAATTGCCAGTTTTCAATCTTCTACTGTAGTTAaaccggtttgtagcgtttctccttctcgggtctgtaactcaaaaaaagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacacc  <  2:1594752‑M1/135‑101 (MQ=255)
                                                                                                                                  aaTTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt             >  2:918574‑M1/1‑32 (MQ=255)
                                                                                                                                     |                                                                                                                                
TTTCTTTCGTCAATTCTACCACCGCTGTCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCCAATTCATACCCCGTTGGCGCTTGGGTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATCGCCAGTTTTCCATCTGCTCCTGTGGTTAGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACTGCAGAACGGTTCCATTGGCATCTTGTAACTCAAAAACAGCTCCTTGCAGGAC  >  AssemblyC74_contig_12/59115‑59337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: