New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AssemblyC74_contig_1 = 261278 (0.890)204 (0.650) 56/254 2.3 59.7% intergenic (–/‑331) –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 –/Two‑component transcriptional response regulator, OmpR family
?AssemblyC74_contig_7 2 = 0 (0.000)intergenic (–/+269) –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 –/Lysyl‑tRNA synthetase (class II) (EC 6.1.1.6)

Only 100 of 494 total aligned reads displayed.

ATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTACATGATCATTGGTTAGTTCT  >  AssemblyC74_contig_1/127‑392
                                                                                                                                      |                                                                                                                                   
aTTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTT                                                                                                                                     >  2:144059‑M1/1‑135 (MQ=255)
aTTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTT                                                                                                                                     >  1:421627‑M1/1‑135 (MQ=255)
aTTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAAATT                                                                                                                                     >  2:2578312‑M1/1‑135 (MQ=255)
aTTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTAGATAGAATCAATCTTCGCAATTGTTTCTTTTTTAAAGACTCAGTTATCTTATCATGTCTTTATTAACATGTAAATAACTT                                                                                                                                     >  1:2472146‑M1/1‑135 (MQ=255)
 tttATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACACGTGGTTCTTTTTTAACGACTCAGTTATATTATCATGTCATTTCCAACATGTCAACAACTTa                                                                                                                                    >  1:1001873/1‑135 (MQ=255)
 tttATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTa                                                                                                                                    >  1:2608542/1‑135 (MQ=255)
   tATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTAtt                                                                                                                                  >  1:282229/1‑135 (MQ=255)
      cATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTAttttt                                                                                                                               <  2:2294850/135‑1 (MQ=255)
      cATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTAttttt                                                                                                                               <  1:1680596/135‑1 (MQ=255)
       aTAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAAC‑TATTTTtta                                                                                                                             >  1:2133428/1‑135 (MQ=11)
          aCTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCATTAACTTttttgttatg                                                                                                                           >  2:358629‑M1/1‑125 (MQ=255)
          aCTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTttatt                                                                                                                           >  2:594837/1‑135 (MQ=255)
           cTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgt                                                                                                                          >  2:1032970‑M1/1‑124 (MQ=255)
           cTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgt                                                                                                                          >  1:546967‑M1/1‑124 (MQ=255)
             tATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgttt                                                                                                                        >  1:1622963‑M1/1‑122 (MQ=255)
             tATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgttt                                                                                                                        >  2:2071336‑M1/1‑122 (MQ=255)
             tATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgttt                                                                                                                        >  1:2151658‑M1/1‑122 (MQ=255)
             tATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgttt                                                                                                                        >  2:1860498‑M1/1‑122 (MQ=255)
             tATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAAC‑TATTTTttaaatttt                                                                                                                       >  1:2710516/1‑129 (MQ=11)
              aTCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTAttt                                                                                                                       <  2:1499636/135‑1 (MQ=255)
               tCGTTTGTTATTTGTCAATAACTTTTTTGAATTTTTTTTCGATTGAATCAAGCTTCGAAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgttttt                                                                                                                      <  1:650609‑M1/135‑16 (MQ=255)
                 gTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttga                                                                                                                    >  2:1135177‑M1/1‑118 (MQ=255)
                 gTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttggtatgtttttta                                                                                                                    >  2:1559724‑M1/1‑118 (MQ=255)
                 gTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTtaat                                                                                                                    >  2:2389520/1‑135 (MQ=255)
                 gTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTtaat                                                                                                                    >  1:1977551/1‑135 (MQ=255)
                 gTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTtaat                                                                                                                    >  1:1034752/1‑135 (MQ=255)
                  tttGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaa                                                                                                                   >  2:473614‑M1/1‑117 (MQ=255)
                       tATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaat                                                                                                              >  1:583166‑M1/1‑112 (MQ=255)
                        aTTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaat                                                                                                              <  2:2680648‑M1/134‑24 (MQ=255)
                            gTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatatttt                                                                                                         <  2:622715‑M1/135‑29 (MQ=255)
                                    cTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCtttt                                                                                                 <  2:1977551/135‑1 (MQ=255)
                                    cTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCtttt                                                                                                 <  2:23303/135‑1 (MQ=255)
                                      tttttGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGa                                                                                               <  2:2416409/135‑1 (MQ=255)
                                      tttttGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGa                                                                                               <  1:794190/135‑1 (MQ=255)
                                        tttGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtctttt                                                                                             <  1:443537‑M1/135‑41 (MQ=255)
                                        tttGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtctttt                                                                                             <  2:1290832‑M1/135‑41 (MQ=255)
                                        tttGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtctttt                                                                                             <  1:2327249‑M1/135‑41 (MQ=255)
                                         ttGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACa                                                                                            <  2:1751133/135‑1 (MQ=255)
                                          tGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTTGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttgg                                                                                           <  1:95617‑M1/135‑43 (MQ=255)
                                          tGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttgg                                                                                           <  1:2242408‑M1/135‑43 (MQ=255)
                                          tGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttg                                                                                            >  1:2532121‑M1/1‑93 (MQ=255)
                                          tGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttg                                                                                            >  2:284851‑M1/1‑93 (MQ=255)
                                          tGAAGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttg                                                                                            >  1:1502935‑M1/1‑93 (MQ=255)
                                            aaGTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggac                                                                                         <  1:328684‑M1/135‑45 (MQ=255)
                                              gTTTTTTTCGATAGAATCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggaca                                                                                        <  1:2781‑M1/134‑46 (MQ=255)
                                                    ttCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAatat                                                                                 <  1:2410499/135‑1 (MQ=255)
                                                      cGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTTTCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAatatat                                                                               <  1:1788806/135‑1 (MQ=255)
                                                            aaTCAAGCTTCGCAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatatacc                                                                          >  2:802956‑M1/1‑75 (MQ=255)
                                                                    ttCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACAt                                                                         <  1:2580166/127‑1 (MQ=255)
                                                                         aaGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagct                                                            >  2:2352333‑M1/1‑62 (MQ=255)
                                                                         aaGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagct                                                            >  1:1113337‑M1/1‑62 (MQ=255)
                                                                         aaGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagct                                                            >  1:1874525‑M1/1‑62 (MQ=255)
                                                                         aaGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataacaactaaatttatct                                                            >  2:883925‑M1/1‑62 (MQ=255)
                                                                         aaGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtctttt                                                                                             >  2:928123‑M1/1‑62 (MQ=255)
                                                                         aaGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAAc                                                                           <  2:2134623/120‑1 (MQ=255)
                                                                         aaGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGt                                                            >  2:832138/1‑135 (MQ=255)
                                                                         aaGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGt                                                            >  1:2674041/1‑135 (MQ=255)
                                                                         aaGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGt                                                            >  1:1333594/1‑135 (MQ=255)
                                                                         aaGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGt                                                            >  2:1894246/1‑135 (MQ=255)
                                                                           ggggttCTTTTTTAACGACTCAGATAACTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagcttg                                                          >  1:2038699‑M1/3‑60 (MQ=255)
                                                                              gTTCTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagcttggtc                                                       <  1:1234124‑M1/135‑79 (MQ=255)
                                                                              gTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATa                                                       <  1:736032/135‑1 (MQ=255)
                                                                                 cTTTTTTAACGACTCAGTTATCTTATCATGTCGTTAGTAACATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagcttggtcaac                                                    >  2:1383232‑M1/1‑54 (MQ=255)
                                                                                 cTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGa                                                    >  1:1562818/1‑135 (MQ=255)
                                                                                 cTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGa                                                    <  1:354354/135‑1 (MQ=255)
                                                                                 cTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTATTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGa                                                    >  1:1151449/1‑135 (MQ=255)
                                                                                  ttttttAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGaa                                                   >  1:237566/1‑135 (MQ=255)
                                                                                   tttttAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGaaa                                                  >  1:2644870/1‑135 (MQ=255)
                                                                                   tttttAACGACTCAGTTATCTAATCATGTCATATACAACATGTCAACAACTTAATTTTTATTATTTAATAAGTTATTGGTGTTATTTTGAAAAAATAAAAATATATCAACATCACATGTGAAATTCAATAATaaa                                                  >  2:1318825/1‑135 (MQ=255)
                                                                                              tCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCttattt                                        <  2:2644870/134‑1 (MQ=255)
                                                                                               cAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCttatttat                                      >  2:2867386/1‑135 (MQ=255)
                                                                                               cAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATAAACATCACATGTGAAAGTCAATAAGAAAATGCttatttat                                      >  2:2549390/1‑135 (MQ=255)
                                                                                                aGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATc                                     <  1:836217/135‑1 (MQ=255)
                                                                                                        tatcATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATa                                                       >  2:1937064/1‑109 (MQ=255)
                                                                                                           cATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCt                            >  2:537589/1‑133 (MQ=255)
                                                                                                             tctCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCt                        >  2:1656820/3‑135 (MQ=255)
                                                                                                             tGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCt                        >  2:306779/1‑135 (MQ=255)
                                                                                                             tGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCt                        <  1:1388521/135‑1 (MQ=255)
                                                                                                             tGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCt                        >  2:2502934/1‑135 (MQ=255)
                                                                                                             tGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCt                        >  2:1202055/1‑135 (MQ=255)
                                                                                                             tGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCt                        >  1:993846/1‑135 (MQ=255)
                                                                                                               tCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTa                      <  2:2819388/135‑1 (MQ=255)
                                                                                                                  tttCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCt                        <  1:1185193/130‑1 (MQ=255)
                                                                                                                  tttCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTACAt                   >  2:2707573/1‑135 (MQ=255)
                                                                                                                   ttCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTACATg                  >  2:1247247/1‑135 (MQ=255)
                                                                                                                    tCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTACATg                  >  1:2920033/1‑134 (MQ=255)
                                                                                                                    tCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTACATGa                 <  1:2887247/135‑1 (MQ=255)
                                                                                                                    tCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTACATGa                 <  2:2010502/135‑1 (MQ=255)
                                                                                                                    tCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTACATGa                 <  2:66416/135‑1 (MQ=255)
                                                                                                                    tCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTACATGa                 <  1:2867386/135‑1 (MQ=255)
                                                                                                                    tCCAACATGTCAACAACTTATTTTATATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATCATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTACATGa                 <  2:407039/135‑1 (MQ=255)
                                                                                                                       aaCATGTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagcttggtcaacgaattttttgtattttttcaagtttttttcaataaacg              >  1:1291820‑M1/1‑16 (MQ=255)
                                                                                                                            gTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagcttggtcaacgaattttttgtattttttcaagtttttttcaataaa                >  2:2202209‑M1/1‑11 (MQ=255)
                                                                                                                            gTCAATAACTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagcttggtcaacgaattttttgtattttttcaagtttttttcaataaa                <  1:2202209‑M1/128‑118 (MQ=255)
                                                                                                                            gTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTACATGATCATTGGt         >  1:1247335/1‑135 (MQ=255)
                                                                                                                              caataaCTTttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagcttggtcaacgaattttttgtattttttcaagtttttttcaataaacgattattc       >  2:1635975‑M1/1‑9 (MQ=255)
                                                                                                                               aataacttttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagcttggtcaacgaattttttgtattttttcaagtttttttcaataaacgattattca      >  1:910424‑M1/4‑8 (MQ=255)
                                                                                                                               aataacttttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagcttggtcaacgaattttttgtattttttcaagtttttttca                     <  1:2274664‑M1/117‑113 (MQ=255)
                                                                                                                               aacaacTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACAt                                <  2:2897160/109‑1 (MQ=255)
                                                                                                                                ataacttttttgttatgtttttgaataaatattttcttctgtcttttggacaagtaataatataccaactaaatttagcttggtcaacgaattttttgtattttttcaagtttttttcaataaacgattattcat     >  2:563164‑M1/3‑7 (MQ=255)
                                                                                                                                      |                                                                                                                                   
ATTTATCATAACTTATCGTTTGTTATTTGTCAAGAACTTTTTTGAAGTTTTTTTCGATAGAATCAAGCTTCACAAGTGGTTCTTTTTTAACGACTCAGTTATCTTATCATGTCATTTCCAACATGTCAACAACTTATTTTTTATTATTTAATAAGTTATTGGTGTTCTTTTGAACAAATAATAATATATCAACATCACATGTGAAAGTCAATAAGAAAATGCTTATTTATCAACATTTCTAGCTTACATGATCATTGGTTAGTTCT  >  AssemblyC74_contig_1/127‑392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.