New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AssemblyC74_contig_54 = 6110 (0.000)314 (0.570) 86/256 0.0 100% intergenic (+1/–) rasttk_feature_creation_tool=tRNAscan‑SE/– tRNA‑Arg‑ACG/–
?AssemblyC74_contig_63 1 = 0 (0.000)intergenic (–/‑8) –/rasttk_feature_creation_tool=tRNAscan‑SE –/tRNA‑Pro‑TGG

Only 100 of 534 total aligned reads displayed.

AAATCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_54/477‑611
                                                                                                                                      |                                                                                                                                     
       gCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaa                                                                                                                                <  2:2649164‑M1/135‑8 (MQ=255)
       gCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaa                                                                                                                                <  2:140977‑M1/135‑8 (MQ=255)
       gCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaatta                                                                                                                                 >  2:273719‑M1/1‑128 (MQ=255)
       gCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaatta                                                                                                                                 >  1:2279217‑M1/1‑128 (MQ=255)
          gtgagtgaTCATCGTACCGGTTCGATTCCGTTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGTGTTTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacg                                                                                                                             <  1:1532265‑M1/135‑11 (MQ=255)
          gtgagtgaTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacg                                                                                                                             <  2:1536211‑M1/135‑11 (MQ=255)
          gtgagtgaTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacg                                                                                                                             <  1:823362‑M1/135‑11 (MQ=255)
                gaTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAATAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagt                                                                                                                       >  2:2785609‑M1/1‑119 (MQ=255)
                gaTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggcagt                                                                                                                       >  2:415095‑M1/1‑119 (MQ=255)
                 aTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      <  1:703576‑M1/135‑18 (MQ=255)
                 aTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      <  2:2420246‑M1/135‑18 (MQ=255)
                 aTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      <  1:493888‑M1/135‑18 (MQ=255)
                     ccGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGtcg                                                                                                                                     >  1:688562/1‑114 (MQ=255)
                      cGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctca                                                                                                                 <  2:199827‑M1/135‑23 (MQ=255)
                      cGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacg                                                                                                                 >  1:1939205‑M2/1‑113 (MQ=255)
                          ccGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagctt                                                                                                             >  1:1023036‑M1/1‑109 (MQ=255)
                           cGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaag                                                                                                            >  1:85902‑M2/1‑108 (MQ=255)
                            ggTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttgg                                                                                                           <  1:43263‑M1/135‑29 (MQ=255)
                            ggTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGATCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttgg                                                                                                           >  1:2754248‑M1/1‑107 (MQ=255)
                            ggTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCACATAGCTAAACTGGAAAGAGTGTTTGACTAAGGATAATGAGGGTAGGGGTTCGACTCCGCGTGGGCGCGTtaattaaacggtaagtagctcagcttgg                                                                                                           >  1:1174199‑M1/1‑107 (MQ=255)
                             gTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagta                                                                                                          >  1:2065602‑M2/1‑106 (MQ=255)
                             gTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagta                                                                                                          >  2:1741199‑M2/1‑106 (MQ=255)
                               tCGAGTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGCTAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggta                                                                                                         <  1:744844‑M1/134‑31 (MQ=255)
                                cGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtag                                                                                                        >  2:1114082‑M1/1‑103 (MQ=255)
                                cGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagct                                                                                                       >  2:593050‑M2/1‑103 (MQ=255)
                                cGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagct                                                                                                       >  1:572768‑M2/1‑103 (MQ=255)
                                cGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtctattttattttttaaacgggaagtagct                                                                                                       >  1:375444‑M2/1‑103 (MQ=255)
                                  aTTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagc                                                                                                     <  1:1783402‑M1/135‑35 (MQ=255)
                                  aTTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctca                                                                                                     >  2:2028398‑M2/1‑101 (MQ=255)
                                  aTTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctca                                                                                                     >  2:80449‑M2/1‑101 (MQ=255)
                                  aTTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctca                                                                                                     >  1:2704860‑M2/1‑101 (MQ=255)
                                  aTTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctca                                                                                                     >  2:692874‑M2/1‑101 (MQ=255)
                                   ttCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagag                                                                                                      >  2:1800136‑M1/1‑100 (MQ=255)
                                   ttCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagag                                                                                                      >  1:2022287‑M1/1‑100 (MQ=255)
                                   ttCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagag                                                                                                      >  2:1050946‑M1/1‑100 (MQ=255)
                                   ttCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagag                                                                                                      >  1:1452524‑M1/1‑100 (MQ=255)
                                   ttCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTcgtgttttttattttttaatcgggaagtagctc                                                                                                      <  1:2005124‑M2/133‑34 (MQ=255)
                                     ccGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagta                                                                                                          >  2:2167687‑M2/1‑98 (MQ=255)
                                       ggTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttg                                                                                                <  1:1284594‑M1/135‑40 (MQ=255)
                                       ggTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttg                                                                                                >  2:2552159‑M2/1‑96 (MQ=255)
                                       ggTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttg                                                                                                >  2:895982‑M2/1‑96 (MQ=255)
                                        gTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttgg                                                                                               <  1:978684‑M1/135‑41 (MQ=255)
                                           cTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGTGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagatcagcttggtag                                                                                            <  2:2617599‑M2/135‑44 (MQ=255)
                                           cTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggta                                                                                             >  2:2217369‑M2/1‑92 (MQ=255)
                                              ggCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagc                                                                                         >  2:2706982‑M2/1‑89 (MQ=255)
                                              ggCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagc                                                                                         >  2:1915721‑M2/1‑89 (MQ=255)
                                                      aaaTATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggg                                                                                 >  1:2459786‑M1/1‑81 (MQ=255)
                                                      aaaTATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggg                                                                                 >  2:2916302‑M1/1‑81 (MQ=255)
                                                      aaaTATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtt                                                                                 <  2:1692618‑M2/135‑55 (MQ=255)
                                                         tctgcGCCCATAGCCCAACTCGACAGAGTGTTTGACTACGGATCACAAGGTTAGGGGTTCGACTCCACTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtc                                                                              <  2:2054975‑M1/133‑58 (MQ=255)
                                                          atGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttggg                                                                             >  1:2603305‑M2/1‑77 (MQ=255)
                                                             cgcCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcag                                                                          <  1:1001731‑M1/135‑62 (MQ=255)
                                                                   tAGCTCAACTGGATAGAGTGTTAGACTACCGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattacacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcga                                                                    <  2:1180993‑M1/135‑68 (MQ=255)
                                                                       tCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaa                                                                   >  2:1346334‑M1/1‑64 (MQ=255)
                                                                          aCTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcagg                                                             >  2:360025‑M2/1‑61 (MQ=255)
                                                                             ggATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtct                                                           >  2:1209515‑M1/1‑58 (MQ=255)
                                                                                 agagTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccg                                                      >  1:2107370‑M1/1‑54 (MQ=255)
                                                                                 agagTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCATGGGCGAGTagtcttttttattttttaaacgggaagtagctcatcttggtagagcacttggattgggaccaaggggtctcaggttcgaa                                                       <  2:1616563‑M2/134‑81 (MQ=255)
                                                                                   agTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgat                                                    >  2:1681138‑M1/1‑52 (MQ=255)
                                                                                      gtTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttg                                                                                                            >  2:2375591‑M1/1‑49 (MQ=255)
                                                                                      gtTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagctgggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataat                                                 >  2:2284486‑M1/1‑49 (MQ=255)
                                                                                      gtTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaa                                                       <  2:1470678‑M2/129‑81 (MQ=255)
                                                                                       tttGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataatt                                                <  1:2446997‑M1/135‑88 (MQ=255)
                                                                                        ttGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataatta                                               >  2:2826319‑M1/1‑47 (MQ=255)
                                                                                        ttGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataatta                                               >  2:618263‑M1/1‑47 (MQ=255)
                                                                                        ttGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataatta                                               >  1:318682‑M1/1‑47 (MQ=255)
                                                                                         tGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtct                                               <  2:532684‑M2/134‑89 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataa                                            >  1:1056225‑M1/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataa                                            >  2:2078347‑M1/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagctt                                                                                                             <  2:1491444‑M1/70‑27 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtgttttttatgttttaaacgggaagtagctcagcttggtcgagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcc                                            <  1:2194665‑M2/135‑92 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcc                                            <  2:744846‑M2/135‑92 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcc                                            <  1:2514559‑M2/135‑92 (MQ=255)
                                                                                            cTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaa                                           >  1:1115390‑M1/1‑43 (MQ=255)
                                                                                                ggATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaattta                                       >  1:891412‑M1/1‑39 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaa                                     >  1:641663‑M1/1‑37 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgatttt                                     <  1:2916566‑M2/135‑99 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgatttt                                     <  1:1803568‑M2/135‑99 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagc                                                                                         <  2:1838211‑M2/83‑47 (MQ=255)
                                                                                                  aTCAAAAGGTGGGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagctgggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaagttaaa                                     >  2:2864651‑M1/1‑37 (MQ=255)
                                                                                                    cAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaaca                                   <  2:1292024‑M1/135‑101 (MQ=255)
                                                                                                    cAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaaca                                   >  1:1202942‑M1/1‑35 (MQ=255)
                                                                                                       aaGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacgg                                <  1:2813088‑M1/135‑104 (MQ=255)
                                                                                                          gTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcg                             <  2:453625‑M2/135‑107 (MQ=255)
                                                                                                                       ctcctcTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaaca                                   >  1:466544‑M1/1‑16 (MQ=255)
                                                                                                                       ctcctcTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctttttgtttt                <  2:1006128‑M2/135‑120 (MQ=255)
                                                                                                                       ctcctcTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctttttgtttt                <  1:2150145‑M2/135‑120 (MQ=255)
                                                                                                                       ctcctcTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctttttgtttt                <  1:1363581‑M2/135‑120 (MQ=255)
                                                                                                                       atcctctTGGGCGCTAtaattaaacgggaagtagctcagcttggtagagcaattggttagggaccaaggggtcgcaggttctaatcctgtcttcccgataattataaatttaaacactgggccttagctcagctg                >  2:962978‑M1/2‑16 (MQ=255)
                                                                                                                        tcctcTTCGGCGAGTagtcgtcttaatctttcaaccgggacctatcgcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctttttgttttc               >  1:2336210‑M2/1‑15 (MQ=255)
                                                                                                                             ttGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagag          <  2:2456547‑M1/135‑126 (MQ=255)
                                                                                                                             ttGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagag          <  1:1760107‑M1/135‑126 (MQ=255)
                                                                                                                             ttGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagag          >  1:1723034‑M1/1‑10 (MQ=255)
                                                                                                                             ttGGGCGCGTagtcttttttattttttaaacgggaagtagctca                                                                                                     >  2:124527‑M2/1‑10 (MQ=255)
                                                                                                                             ttGGGCGCGTagtcttttttattttttaaacgggaagtagctca                                                                                                     <  1:124527‑M2/44‑35 (MQ=255)
                                                                                                                               gggCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagagc         >  2:178209‑M1/1‑8 (MQ=255)
                                                                                                                               gggCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcacgataattataaatttaaa                                     <  1:910205‑M1/106‑99 (MQ=255)
                                                                                                                               gggCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaagggg                                                                    <  1:1500‑M2/75‑68 (MQ=255)
                                                                                                                                      ttaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttcgctccgctgggagagcgcctgct  <  1:1589583‑M1/134‑134 (MQ=255)
                                                                                                                                      ttaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagagcgcctgct  <  1:1667363‑M1/134‑134 (MQ=255)
                                                                                                                                      |                                                                                                                                     
AAATCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_54/477‑611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.