New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AssemblyC74_contig_49 1 =0 (0.000)275 (0.700) 71/256 0.2 100% intergenic (–/‑111) –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 –/Mobile element protein
?AssemblyC74_contig_55 = 585 0 (0.000)intergenic (–/–) –/– –/–

Only 100 of 275 total aligned reads displayed.

ACCTTCGGGTGGTTATTTTTTTATACACAATCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_55/454‑585
                                                                                                                                   |                                                                                                                                      
aCCTTCGGGTGTTTATTTTTTTATACACAATCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGATACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAac                                                                                                                                      >  2:1639277‑M2/1‑132 (MQ=255)
aCCTTCGGGTGGTTATTTTTTTATACACAATCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAac                                                                                                                                      >  2:50695‑M2/1‑132 (MQ=255)
 ccTTCGGGTGGTTATTTTTTTATACACAATCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATATGATGAGATTATAATAAaccc                                                                                                                                    <  1:63710‑M2/135‑5 (MQ=255)
    tCGGGTGGTTATTTTTTTATACACAATCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtg                                                                                                                                 <  2:974585‑M2/135‑8 (MQ=255)
      gggTGGTTATTTTTTTATACACAATCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtgg                                                                                                                                <  2:1056539‑M2/134‑9 (MQ=255)
              aTTTTTTTATACACAATCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagtta                                                                                                                       <  1:2186336‑M2/135‑18 (MQ=255)
                     tataCACAATCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaatttttt                                                                                                                >  1:2173903‑M2/1‑111 (MQ=255)
                     tataCACAATCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaatttttt                                                                                                                >  1:344755‑M2/1‑111 (MQ=255)
                            aaTCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagag                                                                                                         >  2:1897234‑M2/1‑104 (MQ=255)
                            aaTCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagag                                                                                                         >  1:380377‑M2/1‑104 (MQ=255)
                             aTCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagagg                                                                                                        >  2:2876561‑M2/1‑103 (MQ=255)
                             aTCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagagg                                                                                                        >  2:566639‑M2/1‑103 (MQ=255)
                             aTCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagagg                                                                                                        >  2:683162‑M2/1‑103 (MQ=255)
                               cTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaa                                                                                                      >  2:1023399‑M2/1‑101 (MQ=255)
                               cTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaa                                                                                                      <  1:2897653‑M2/135‑35 (MQ=255)
                                      cTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcatagaggaaaatgtat                                                                                               <  2:2643718‑M2/135‑42 (MQ=255)
                                         tttCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaa                                                                                            <  1:530267‑M2/135‑45 (MQ=255)
                                         gttcCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaa                                                                                            >  1:159686‑M2/2‑91 (MQ=255)
                                           tCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctataca                                                                                          <  2:2208416‑M2/135‑47 (MQ=255)
                                           tCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaaca                                                                                          <  2:1115100‑M2/135‑47 (MQ=255)
                                           tCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaaca                                                                                          <  1:2516277‑M2/135‑47 (MQ=255)
                                           tCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaaca                                                                                          <  1:1047367‑M2/135‑47 (MQ=255)
                                                    aGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaa                                                                                 <  2:2056358‑M2/135‑56 (MQ=255)
                                                        atgatgACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatca                                                                             >  1:2319967‑M2/1‑76 (MQ=255)
                                                             gaCATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaa                                                                        >  1:1547930‑M2/1‑71 (MQ=255)
                                                             gaCATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaa                                                                         >  2:1496406‑M2/1‑71 (MQ=255)
                                                             gaCATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaa                                                                         >  2:535178‑M2/1‑71 (MQ=255)
                                                              aCATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaa                                                                       <  1:325306‑M2/135‑66 (MQ=255)
                                                                aTCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaa                                                                      >  2:203256‑M2/1‑68 (MQ=255)
                                                                aTCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaa                                                                      >  1:1163353‑M2/1‑68 (MQ=255)
                                                                 tCTGTTCAGTGCTACTCGAATGAATATTTTTTTAGTATTGATTTTTTATAGTATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacttgttggtatatcaactaaaaaa                                                                    >  2:703806‑M2/1‑67 (MQ=255)
                                                                  cTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaac                                                                   >  1:1860808‑M2/1‑66 (MQ=255)
                                                                   tGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacg                                                                  <  2:248561‑M2/135‑71 (MQ=255)
                                                                   tGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacg                                                                  <  2:1280072‑M2/135‑71 (MQ=255)
                                                                   tGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaa                                                                         >  2:624034‑M2/1‑65 (MQ=255)
                                                                   tGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagt                                                                                                                         <  2:123603‑M2/80‑16 (MQ=255)
                                                                     ttCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgca                                                                <  1:66652‑M2/135‑73 (MQ=255)
                                                                        agagCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatat                                                             <  2:1322094‑M2/135‑76 (MQ=255)
                                                                             tACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagta                                                         <  2:90231‑M2/134‑80 (MQ=255)
                                                                             tACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagta                                                         <  1:91395‑M2/134‑80 (MQ=255)
                                                                               cTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtc                                                      >  2:2910891‑M2/1‑53 (MQ=255)
                                                                               cTCGAAAGAATAGTTTTTTAGTATTGATTTTTAATAGGATGAGATTATAATAAacacgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaaagcatatagtatt                                                       <  2:396884‑M2/134‑82 (MQ=255)
                                                                                  gAAAGAATATTGTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   >  2:2547406‑M2/1‑50 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaattgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  1:575801‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  2:158491‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  1:1678455‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  2:2156758‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  1:1781218‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  1:1811606‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  2:251773‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  1:694439‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  1:1264720‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  1:1192851‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  1:2911336‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  1:2077331‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctca                                                   <  2:653983‑M2/135‑86 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaa                                                                        <  2:2658439‑M2/114‑65 (MQ=255)
                                                                                  gAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaataaacaaaaaaacgcatattgtagtctca                                                   >  2:1801662‑M2/1‑50 (MQ=255)
                                                                                     aGAATAGTTTTTTAGTATTGATTTTTGAGAGGATGAGATGATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaa                                                 >  1:2361276‑M2/1‑47 (MQ=255)
                                                                                       aaTAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaac                                               <  2:1364259‑M2/134‑90 (MQ=255)
                                                                                       aaTAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaa                                                                         <  2:636157‑M2/108‑64 (MQ=255)
                                                                                       aaTAGTTTTTTAGTATTGATTTTTTAAAGGATGAGATTATAATAAacccgtggtgcaagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaatcgcatatagaagtctcaaaac                                               <  1:547559‑M2/134‑90 (MQ=255)
                                                                                            ttttttAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaa                                         <  2:2341659‑M2/135‑96 (MQ=255)
                                                                                            ttttttAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaa                                         <  1:2262331‑M2/135‑96 (MQ=255)
                                                                                            ttttttAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaa                                         <  1:895097‑M2/135‑96 (MQ=255)
                                                                                            ttttttAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaa                                                                        <  1:10172‑M2/104‑65 (MQ=255)
                                                                                              ttttAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaaga                                       >  1:1492437‑M2/1‑38 (MQ=255)
                                                                                              ttttAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaaga                                       >  1:454550‑M2/1‑38 (MQ=255)
                                                                                                 tAGTTTTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagacat                                    >  2:1304953‑M2/1‑35 (MQ=255)
                                                                                                 tAGTATTGATTTTTTATTGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaat                                    >  1:613883‑M2/1‑35 (MQ=255)
                                                                                                 tAGTATTGATTTTTTATAGTATGCGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaat                                    >  2:2738009‑M2/1‑35 (MQ=255)
                                                                                                 tAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaat                                    >  1:2147295‑M2/1‑35 (MQ=255)
                                                                                                 tAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaat                                    >  1:760609‑M2/1‑35 (MQ=255)
                                                                                                 tAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaat                                    >  2:325306‑M2/1‑35 (MQ=255)
                                                                                                 tAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaat                                    >  1:1287905‑M2/1‑35 (MQ=255)
                                                                                                 tAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaat                                    >  1:2321095‑M2/1‑35 (MQ=255)
                                                                                                 tAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaat                                    >  2:1758969‑M2/1‑35 (MQ=255)
                                                                                                 tAGTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaat                                    >  1:2455457‑M2/1‑35 (MQ=255)
                                                                                                   gTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatga                                  >  1:2684566‑M2/1‑33 (MQ=255)
                                                                                                   gTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatga                                  >  1:2042343‑M2/1‑33 (MQ=255)
                                                                                                   gTATTGATTTTTTATAGGATGAGATTATAATAAacccgtggagctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatga                                  >  2:2416947‑M2/1‑33 (MQ=255)
                                                                                                    tATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgag                                 <  2:1000904‑M2/135‑104 (MQ=255)
                                                                                                    tATTGATTTTTTATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaa                                      <  2:147608‑M2/130‑99 (MQ=255)
                                                                                                              ttATAGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatat                       >  2:2692479‑M2/1‑22 (MQ=255)
                                                                                                                 taGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatga                                  >  1:2776629‑M2/1‑19 (MQ=255)
                                                                                                                 taGGATGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatga                                  <  2:2776629‑M2/121‑103 (MQ=255)
                                                                                                                      tGAGATTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcat               <  1:846877‑M2/135‑122 (MQ=255)
                                                                                                                       tagatTATAATAAacccgtggtgctagttaattttttcctagagtaaaatgtataaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatc              >  2:748072‑M2/2‑13 (MQ=255)
                                                                                                                       gagaTTATAATAAacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatc              <  1:2005089‑M2/135‑123 (MQ=255)
                                                                                                                              taataaacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtacatcaacaaaaaaacgcatatattagtctcaaaactcccaagaaatgaggactacatatgcgttcatcaaaatat       >  2:1658749‑M2/1‑6 (MQ=255)
                                                                                                                              taataaacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatcaaaatat       >  1:397866‑M2/1‑6 (MQ=255)
                                                                                                                              taataaacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatcaaaatat       >  1:2056358‑M2/1‑6 (MQ=255)
                                                                                                                              taataaacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatcaaaatat       >  2:52682‑M2/1‑6 (MQ=255)
                                                                                                                              taataaacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatcaaaatat       >  1:1748592‑M2/1‑6 (MQ=255)
                                                                                                                              taataaacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatcaaaatat       >  2:2622356‑M2/1‑6 (MQ=255)
                                                                                                                              taataaacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatcaaaatat       >  2:2333863‑M2/1‑6 (MQ=255)
                                                                                                                                 taaacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatcaaaatatact    <  1:2569262‑M2/135‑133 (MQ=255)
                                                                                                                                 taaacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatcaaaatatact    >  1:1144810‑M2/1‑3 (MQ=255)
                                                                                                                                 taaacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatcaaaatatact    <  1:1336856‑M2/135‑133 (MQ=255)
                                                                                                                                   aacccgtggtgctagttaattttttcctagaggaaaatgtctaaacatgttggtaaatcaacaaaaaaacgcatatagtagtctcaaaactcccaagaaatgaggactacatatgcgttcatcaaaatatactga  >  2:2262331‑M2/1‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                      
ACCTTCGGGTGGTTATTTTTTTATACACAATCTTATGTCTATTTCCTTCATAAGTTATGATGACATCTGTTCAGAGCTACTCGAAAGAATAGTTTTTTAGTATTGATTTTTTATAGGATGAGATTATAATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_55/454‑585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.