Predicted mutation
evidence seq id position mutation annotation gene description
RA AssemblyC74_contig_12 59,248 C→T A30A (GCG→GCA rasttk_feature_annotation_tool=annotate_proteins_km er_v2 ← Putative peptidoglycan bound protein (LPXTG motif) Lmo2178 homolog

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AssemblyC74_contig_1259,2480CT99.6% 840.8 / ‑5.7 256A30A (GCG→GCArasttk_feature_annotation_tool=annotate_proteins_km er_v2Putative peptidoglycan bound protein (LPXTG motif) Lmo2178 homolog
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (124/130);  total (126/130)
Fisher's exact test for biased strand distribution p-value = 4.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 256 total aligned reads displayed.

TTCTTTCGTCAATTCTACCACCGCTGTCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCCAATTCATACCCCGTTGGCGCTTGGGTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATCGCCAGTTTTCCATCTGCTCCTGTGGTTAGACCTGACTGCAGAACGGTTCCATTGGCATCTTGTAACTCAAAAACAGCTCCTTGCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑C  >  AssemblyC74_contig_12/59116‑59337
                                                                                                                                    |                                                                                                                                
ttctttcGTCAATTCTACCACCGCAGTCTGACTTCTTTCGATCTCAAACTAGAAAGGTTTCGCATCCAATTCATACCCCGTTGGCGAATGGGTTTCTAACATCTGATACACTCCTGGAGCTAAGACGACAATCGc                                                                                                                                >  2:1088831/1‑135 (MQ=25)
          aaTCCTACCACCGCTGTCTGACTACTTTCGATCACAAACTCGATTGGTTTCGCATCTATTTCCTTCCCTATTTGAGCTGGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTcc                                                                                                                       <  1:1460849/134‑1 (MQ=16)
           aTTCTACCACCGCTGTCTGACTTCTTTCGTTCTCATTCTCTTTTGGTGTCGCATCTAATTCATACCCTCTTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAt                                                                                                                     <  1:1128499/135‑1 (MQ=18)
           aTTCTACCACCGCTGTCTGACTTCTTTCGTGCTCAAACTCGTTTGGTGTCGCATCTTATTCATTCCGTATTGGCGCTTGAGTTTATACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAt                                                                                                                     <  2:1514203/135‑1 (MQ=18)
           aTTCTACCACCGCTGTCTGACTTCTTTCGATCTCATCCTCGATCGGTGTCGCATATTATTCATCACTTTTCGGCTGTTGAGGTTGTACAAGCTGTAATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCAt                                                                                                                     <  2:2262742/135‑1 (MQ=255)
           aTTCTACCACCGCTGTCTGACTTCTTTCGATCTAAAACTCGATTGGTGTCGCATCTTATTCATAGGCTATTGGCGCTTGAGTTTCTACCAGGTGATATGCTCCTGGTGATTAAGCGTCAATTGCCTGTTTTCCAt                                                                                                                     <  1:6324/135‑1 (MQ=18)
           aTTCTACCACCGCTGTCTGACTTCTTTAGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCAt                                                                                                                     <  2:2282458/135‑1 (MQ=18)
               tACCACCTCTGTCTGACTTCTTTCGATCTCAAACTCGTTTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGATGATATGTTCCTGGTGCTAAAACGTCAATTGCCAGTTTTCCATCttc                                                                                                                 <  1:1101124/135‑3 (MQ=255)
                accaccGCTGTCTGACTTCTTACGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTTCCAGCTGTGATTCTCCTGTTGCTAAACCGTCAATTGCCAGTTTTCCAtcttct                                                                                                                <  1:789163/135‑1 (MQ=18)
                accaccGCCGTCCGACTTCTTTCGATCTCAATCTCGCTTGCTGTCGGATATAATTCATACTCTTGTGGCGCTTGGTTTTATAGATGCTGATAAGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAtcttct                                                                                                                <  2:848214/135‑1 (MQ=255)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                       <  2:2641413/135‑1 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                       <  1:1728804/135‑1 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                       >  2:1157996/1‑135 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                       <  1:1956524/135‑1 (MQ=17)
                          tCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTa                                                                                                      >  1:1066388/1‑135 (MQ=17)
                            tGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAa                                                                                                     >  1:2059841‑M1/1‑133 (MQ=255)
                            tGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGa                                                                                                    <  2:4050/135‑1 (MQ=17)
                            tGACTGCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAa                                                                                                     >  1:2157109‑M1/1‑133 (MQ=255)
                             gACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaac                                                                                                   >  1:267772‑M1/1‑132 (MQ=255)
                             gACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaac                                                                                                   >  2:680881‑M1/1‑132 (MQ=255)
                               cttcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccg                                                                                                 >  1:2846144/1‑134 (MQ=14)
                                 tcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggt                                                                                               <  1:2552713/135‑4 (MQ=14)
                                  cttTCGATCTCAAACTCGATTGGTTACGCATCTAATTCATACCCTAATGGCGCTTGGGTTTCTACCAGCTGATATGATCCTGGTGATAAACCGTCAATTGCCAGTTTTCCATCTTATACTGTAGTTAAAccggtt                                                                                              >  2:141596/1‑131 (MQ=12)
                                  cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                              >  2:1725114/1‑131 (MQ=14)
                                  cttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAt                                                                                                                     <  1:841262/112‑1 (MQ=14)
                                    ttCGATCTCAATCTCGATTGGTGTCTCATCTAATTCATACCCTATTGGCGCTTTAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCTTTTGCCAGTTTTCCATCTTCTCCTGTAGTTAAAccggtttg                                                                                            <  1:957774/135‑7 (MQ=2)
                                       gATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGt                                                                                                                            >  2:289701/1‑100 (MQ=17)
                                       gATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTcc                                                                                                                       <  2:1934804/105‑1 (MQ=14)
                                       gATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTcc                                                                                                                       >  1:1934733/1‑105 (MQ=14)
                                           tcAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAt                                                                                                                     >  2:1360921/1‑103 (MQ=14)
                                           tcAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGtt                                                                                                       <  2:582396/117‑1 (MQ=11)
                                                           tCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttc                                                                      <  2:486857‑M1/134‑33 (MQ=255)
                                                              cATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgt                                                                   >  1:1024836‑M1/1‑99 (MQ=255)
                                                              cATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgt                                                                   >  1:521795‑M1/1‑99 (MQ=255)
                                                                      tCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaa                                                           >  1:1340565‑M1/1‑91 (MQ=255)
                                                                      tCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaa                                                           >  2:1885887‑M1/1‑91 (MQ=255)
                                                                      tCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaa                                                           >  2:894731‑M1/1‑91 (MQ=255)
                                                                       cATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaa                                                         <  2:1703281‑M1/135‑46 (MQ=255)
                                                                       cATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaa                                                         <  1:1179183‑M1/135‑46 (MQ=255)
                                                                           ccctattggcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaa                                                         >  1:1867372‑M1/6‑86 (MQ=255)
                                                                             ctattggcGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagc                                                     >  2:2732536‑M1/4‑84 (MQ=255)
                                                                              tattggCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcc                                                  >  2:493234‑M1/3‑83 (MQ=255)
                                                                              tattggCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcc                                                  <  1:2633729‑M1/133‑53 (MQ=255)
                                                                               attgGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcct                                                 <  2:1278192‑M1/134‑54 (MQ=255)
                                                                                 tGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                               >  1:53889‑M1/1‑80 (MQ=255)
                                                                                 tGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                               <  2:390949‑M1/135‑56 (MQ=255)
                                                                                 tGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttatccttctcggttctgtaactcaaaaacagctccttg                                               <  2:1667821‑M1/135‑56 (MQ=255)
                                                                                   gcgcTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCttc                                                                                                                 >  1:2232761/1‑65 (MQ=11)
                                                                                   gcgcTTGAGTTTCTACCAGCTGATGTGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                             >  1:1591825‑M1/1‑78 (MQ=255)
                                                                                   gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                             >  2:715672‑M1/1‑78 (MQ=255)
                                                                                   gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                             >  2:257765‑M1/1‑78 (MQ=255)
                                                                                   gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                             >  2:449269‑M1/1‑78 (MQ=255)
                                                                                   gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                             >  1:731267‑M1/1‑78 (MQ=255)
                                                                                   gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                             >  1:1310451‑M1/1‑78 (MQ=255)
                                                                                   gcgcTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttatccttctcggttctgtaactcaaaaacagctccttgaa                                             >  1:2718948‑M1/1‑78 (MQ=255)
                                                                                      cTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaagga                                          <  1:2344528‑M1/135‑61 (MQ=255)
                                                                                         gggTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATAGCCAGTTTTCCATCTTCTCCTGTAGTTAGACCTGTGTGAAGATGTTCTCCTTAGCCTTTATGTAACTCAAAAACAGCTCCTTGCAGGaaat                                       >  2:2069885/1‑132 (MQ=9)
                                                                                         gagttTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggactt                                       >  1:2063936‑M1/3‑72 (MQ=255)
                                                                                         gagttTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggactt                                       >  1:918169‑M1/3‑72 (MQ=255)
                                                                                         gagttTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggactt                                       >  1:1368443‑M1/3‑72 (MQ=255)
                                                                                         gagttTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggactt                                       >  1:2012813‑M1/3‑72 (MQ=255)
                                                                                           gTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttc                                                                      >  2:2822404‑M1/1‑70 (MQ=255)
                                                                                           gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaactgctccttgaaggacttc                                      >  2:1751495‑M1/1‑70 (MQ=255)
                                                                                           gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                      >  2:338233‑M1/1‑70 (MQ=255)
                                                                                           gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                      >  2:318124‑M1/1‑70 (MQ=255)
                                                                                           gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggact                                        <  2:2466341‑M1/132‑63 (MQ=255)
                                                                                           gTTTCTACCAGCTGATATGATCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAtaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggact                                        >  1:2466341‑M1/1‑70 (MQ=255)
                                                                                            tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                     <  2:1017754‑M1/134‑66 (MQ=255)
                                                                                                tACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccact                                <  1:391808‑M1/135‑71 (MQ=255)
                                                                                                 aCCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccact                                >  2:1851530‑M1/1‑64 (MQ=255)
                                                                                                 aCCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccact                                >  2:2584926‑M1/1‑64 (MQ=255)
                                                                                                     gCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                           <  1:2900466‑M1/135‑76 (MQ=255)
                                                                                                        gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                           <  1:428907‑M1/126‑76 (MQ=255)
                                                                                                        gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                           <  1:2686702‑M1/126‑76 (MQ=255)
                                                                                                         atatgctcctgGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagc                       >  2:2368461‑M1/6‑56 (MQ=255)
                                                                                                         atatgctcctgGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcct                                                 >  2:760708‑M1/6‑56 (MQ=255)
                                                                                                         atatgctcctgGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcct                                                 <  1:760708‑M1/104‑54 (MQ=255)
                                                                                                         atatgctcctgGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagcaccttgaaggacttca                                     >  2:120663‑M1/6‑56 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  2:731267‑M1/134‑86 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  2:1176656‑M1/134‑86 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  2:110078‑M1/134‑86 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  1:1504953‑M1/134‑86 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                 <  2:363540‑M1/134‑86 (MQ=255)
                                                                                                                  tGGTGCTAAACCGTCAATTGCCAGTTTTCCAACATCTCCTGTAGTTAcaccggtttggagcgttactccttctcgtttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaat              <  2:2019871‑M1/135‑89 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAcaccggtttgtagcgtttctccttctcggttc                                                                      <  1:1006259‑M1/78‑33 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctctgttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt             <  2:160504‑M1/135‑90 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt             >  1:1893‑M1/1‑46 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt             >  2:2037091‑M1/1‑46 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt             >  2:2839861‑M1/1‑46 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt             >  2:783274‑M1/1‑46 (MQ=255)
                                                                                                                    gagctAAACCGACAATTGCCAGTTTTCCATCTACTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcctagaagtacttcaccactgccttcagcaagtttaatta            >  2:2439373‑M1/3‑45 (MQ=255)
                                                                                                                    gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta            <  1:1608550‑M1/135‑91 (MQ=255)
                                                                                                                    gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta            <  2:2147516‑M1/135‑91 (MQ=255)
                                                                                                                      gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag           >  1:1738601‑M1/1‑43 (MQ=255)
                                                                                                                      gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                     <  1:306376‑M1/108‑66 (MQ=255)
                                                                                                                            ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaac     >  1:1786827‑M1/1‑37 (MQ=255)
                                                                                                                            ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaac     >  2:1298253‑M1/1‑37 (MQ=255)
                                                                                                                              gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacacc  <  1:1885887‑M1/135‑101 (MQ=255)
                                                                                                                              gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacacc  <  1:757054‑M1/135‑101 (MQ=255)
                                                                                                                              gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta            >  1:7057‑M1/1‑35 (MQ=255)
                                                                                                                                    |                                                                                                                                
TTCTTTCGTCAATTCTACCACCGCTGTCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCCAATTCATACCCCGTTGGCGCTTGGGTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATCGCCAGTTTTCCATCTGCTCCTGTGGTTAGACCTGACTGCAGAACGGTTCCATTGGCATCTTGTAACTCAAAAACAGCTCCTTGCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑C  >  AssemblyC74_contig_12/59116‑59337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: