New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AssemblyC74_contig_54 = 6110 (0.000)418 (0.530) 90/248 0.0 100% intergenic (+1/–) rasttk_feature_creation_tool=tRNAscan‑SE/– tRNA‑Arg‑ACG/–
?AssemblyC74_contig_63 1 = 0 (0.000)intergenic (–/‑8) –/rasttk_feature_creation_tool=tRNAscan‑SE –/tRNA‑Pro‑TGG

Only 100 of 797 total aligned reads displayed.

AAATCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_54/477‑611
                                                                                                                                      |                                                                                                                                     
  aTCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTta                                                                                                                                     >  1:408429‑M1/1‑133 (MQ=255)
  aTCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTa                                                                                                                                      <  2:2386783‑M2/134‑2 (MQ=255)
       gCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCCTAGCTCAACTGGATAGAGTGTTTGACTACGGTTCAAAAGGATAGGGGTTCGACTCCTCTTGGGCGCGTtaatta                                                                                                                                 >  2:2685963‑M1/1‑128 (MQ=255)
       gCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaatta                                                                                                                                 >  2:39866‑M1/1‑128 (MQ=255)
         ggTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGtcg                                                                                                                                     >  1:1763039/1‑126 (MQ=255)
         ggTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaac                                                                                                                              >  2:2208716‑M1/1‑126 (MQ=255)
         ggTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttt                                                                                                                              <  1:3199445‑M2/135‑10 (MQ=255)
          gtgagtgaTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTTTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacg                                                                                                                             <  1:3010614‑M1/135‑11 (MQ=255)
          gtgagtgaTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtctttttt                                                                                                                             <  2:1917817‑M2/135‑11 (MQ=255)
          gtgagtgaTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtctttttt                                                                                                                             <  1:165265‑M2/135‑11 (MQ=255)
                gaTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagt                                                                                                                       >  1:57673‑M1/1‑119 (MQ=255)
                gaTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagt                                                                                                                       >  1:994943‑M1/1‑119 (MQ=255)
                gaTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagt                                                                                                                       >  1:1515530‑M1/1‑119 (MQ=255)
                 aTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      <  2:798938‑M1/135‑18 (MQ=255)
                 aTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      <  2:1524463‑M1/135‑18 (MQ=255)
                 aTCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      <  1:3423598‑M1/135‑18 (MQ=255)
                   cACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaa                                                                                                                    >  1:2754686‑M2/1‑116 (MQ=255)
                      cGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctca                                                                                                                 <  2:2024827‑M1/135‑23 (MQ=255)
                      cGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacg                                                                                                                 >  1:683480‑M2/1‑113 (MQ=255)
                          ccGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagctt                                                                                                             >  2:3586463‑M1/1‑109 (MQ=255)
                            ggTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttgg                                                                                                           >  2:1420806‑M1/1‑107 (MQ=255)
                            ggTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttgg                                                                                                           <  1:3260776‑M1/135‑29 (MQ=255)
                                cGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtag                                                                                                        >  1:468696‑M1/1‑103 (MQ=255)
                                cGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      >  1:2280737‑M1/1‑103 (MQ=255)
                                cGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      <  2:2280737‑M1/120‑18 (MQ=255)
                                  aTTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagc                                                                                                     <  2:1055616‑M1/135‑35 (MQ=255)
                                  aTTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagc                                                                                                     <  2:57673‑M1/135‑35 (MQ=255)
                                  aTTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctca                                                                                                     >  2:205604‑M2/1‑101 (MQ=255)
                                  aTTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctca                                                                                                     >  2:1965606‑M2/1‑101 (MQ=255)
                                  aTTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctca                                                                                                     >  2:2963379‑M2/1‑101 (MQ=255)
                                   ttCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagag                                                                                                      >  2:2609051‑M1/1‑100 (MQ=255)
                                   ttCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctc                                                                                                      <  1:2084880‑M2/133‑34 (MQ=255)
                                       ggTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttg                                                                                                <  1:1838566‑M1/135‑40 (MQ=255)
                                       ggTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttg                                                                                                <  1:3569934‑M1/135‑40 (MQ=255)
                                       ggTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttg                                                                                                >  1:2199408‑M2/1‑96 (MQ=255)
                                           cTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggttt                                                                                            >  1:726760‑M1/1‑92 (MQ=255)
                                           cTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggttt                                                                                            >  1:625349‑M1/1‑92 (MQ=255)
                                           cTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttg                                                                                                            >  1:1448639‑M1/1‑92 (MQ=255)
                                           cTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtag                                                                                            <  1:807095‑M2/135‑44 (MQ=255)
                                             cGGCCTTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagag                                                                                          >  2:3418786‑M2/1‑90 (MQ=255)
                                              ggCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagc                                                                                         >  1:1245928‑M2/1‑89 (MQ=255)
                                              ggCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagc                                                                                         >  1:316027‑M2/1‑89 (MQ=255)
                                              ggCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagc                                                                                         >  1:1899853‑M2/1‑89 (MQ=255)
                                              ggCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagc                                                                                         >  1:895624‑M2/1‑89 (MQ=255)
                                                cATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcac                                                                                       <  2:466172‑M2/135‑49 (MQ=255)
                                                 aTTTCAAATCTGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggac                                                                                       <  1:3642772‑M1/134‑49 (MQ=255)
                                                      aaaTATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggg                                                                                 >  1:3474921‑M1/1‑81 (MQ=255)
                                                       aaTATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaagggg                                                                                <  2:3658229‑M1/135‑56 (MQ=255)
                                                       aaTATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaagggg                                                                                <  1:2168349‑M1/135‑56 (MQ=255)
                                                         tatGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgg                                                                              >  1:1070187‑M2/1‑78 (MQ=255)
                                                                         aaCTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcag                                                              >  1:3356951‑M2/1‑62 (MQ=255)
                                                                             ggATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtc                                                                  >  2:3120181‑M2/1‑58 (MQ=255)
                                                                                 agagTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccg                                                      >  1:1008924‑M1/1‑54 (MQ=255)
                                                                                 agagTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttgggttgggaccaaggggtcgcaggttcgaatcctgtcttcccg                                                      >  1:2846558‑M1/1‑54 (MQ=255)
                                                                                 agagTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttg                                                                                    <  2:3258192‑M2/105‑52 (MQ=255)
                                                                                   agTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgat                                                    >  2:958403‑M1/1‑52 (MQ=255)
                                                                                      gtTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataat                                                 >  1:1594946‑M1/1‑49 (MQ=255)
                                                                                      gtTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataat                                                 >  2:3883223‑M1/1‑49 (MQ=255)
                                                                                      gtTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcc                                                        >  2:130573‑M1/1‑49 (MQ=255)
                                                                                      gtTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagta                                                                                                          >  2:1488626‑M2/1‑49 (MQ=255)
                                                                                      gtTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaag                                                                                                            <  2:2825896‑M2/76‑28 (MQ=255)
                                                                                        ttGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataatta                                               >  2:710020‑M1/1‑47 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataa                                            >  2:3356737‑M1/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataa                                            >  2:2457073‑M1/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataa                                            >  1:1700480‑M1/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataa                                            >  2:1851948‑M1/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataa                                            >  1:375578‑M1/1‑44 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtatagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcc                                            <  1:1940096‑M2/135‑92 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcc                                            <  1:3048921‑M2/135‑92 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcc                                            <  1:2660256‑M2/135‑92 (MQ=255)
                                                                                           aCTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagta                                                                                                          >  1:2346402‑M2/1‑44 (MQ=255)
                                                                                            cTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttccc                                           <  2:1174906‑M2/135‑93 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaa                                     >  1:2553950‑M1/1‑37 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaa                                     >  2:512853‑M1/1‑37 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataatt                                                <  2:2763456‑M1/124‑88 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      >  1:29071‑M1/1‑37 (MQ=255)
                                                                                                  aTCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagta                                                                                                                      <  2:3197669‑M1/54‑18 (MQ=255)
                                                                                                    cAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagct                                                                                                       >  2:1598572‑M2/1‑35 (MQ=255)
                                                                                                       aaGGTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagaacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacgg                                <  1:248238‑M1/135‑104 (MQ=255)
                                                                                                         ggTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaactttaagtagctcagcttggtagcgcaattggtttgggacaaatgggtcgaaggttcgaatcctgtcttcccgatatttataattttaaacacgggg                              <  1:522973‑M1/135‑106 (MQ=255)
                                                                                                         ggTTAGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacgggg                              <  1:3693274‑M1/135‑106 (MQ=255)
                                                                                                             aGGGGTTCGACTCCTCTTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggatcgaatcctgtcttcccgataattataaatttaaacacggggcctt                          <  2:2136824‑M1/135‑110 (MQ=255)
                                                                                                               gggTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctt                        <  1:1613056‑M2/135‑112 (MQ=255)
                                                                                                               gggTTCGACTCCTCTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttccc                                           >  2:1112480‑M2/1‑24 (MQ=255)
                                                                                                                       ctcctcTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcgcgattttttttatgttgctttttgtg                  <  2:3718891‑M2/133‑118 (MQ=255)
                                                                                                                       ctcctcTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctttttgtttt                <  2:1698648‑M2/135‑120 (MQ=255)
                                                                                                                        tcctcTTGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctttttgttttc               >  1:2024998‑M2/1‑15 (MQ=255)
                                                                                                                          ctctTGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctggga             <  2:3793898‑M1/135‑123 (MQ=255)
                                                                                                                             ttGGGCGCGTtaattaaactgtaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagag          <  2:3535962‑M1/135‑126 (MQ=255)
                                                                                                                             ttGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagag          <  2:1648520‑M1/135‑126 (MQ=255)
                                                                                                                             ttGGGCGCGTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaaca                                   >  1:1194348‑M1/1‑10 (MQ=255)
                                                                                                                             ttGGGCGCGTtaattaaacgggaagtagctcagcttggtagagc                                                                                                     <  2:2878769‑M1/44‑35 (MQ=255)
                                                                                                                             ttGGGCGCGTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctttttgttttcaaatg          <  1:1338772‑M2/135‑126 (MQ=255)
                                                                                                                                  cgcgTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaagggg                                                                    >  2:843087‑M2/1‑5 (MQ=255)
                                                                                                                                  cgcgTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaagggg                                                                    <  1:843087‑M2/72‑68 (MQ=255)
                                                                                                                                     gTtaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagag          <  2:651842‑M1/127‑126 (MQ=255)
                                                                                                                                     gTagtcttttttattttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctttttgttttcaaatgatttataa  <  1:2812223‑M2/135‑134 (MQ=255)
                                                                                                                                     gTagtctttttaaatttttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgattttttttatcttgctttttgttttcaaatgatttataa  <  2:1223830‑M2/135‑134 (MQ=255)
                                                                                                                                      ttacttaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagagcgcctgct  <  2:1792745‑M1/134‑134 (MQ=255)
                                                                                                                                      ttaattaaacgggaagtagctcagcttggtagagcacttggtttgggaccaaggggtcgcaggttcgaatcctgtcttcccgataattataaatttaaacacggggccttagctcagctgggagagcgcctgct  <  1:3883223‑M1/134‑134 (MQ=255)
                                                                                                                                      |                                                                                                                                     
AAATCCTGCGGTGAGTGATCACCGTACCGGTTCGATTCCGGTCCTCGGCATTTCAAATATGCGCCCATAGCTCAACTGGATAGAGTGTTTGACTACGGATCAAAAGGTTAGGGGTTCGACTCCTCTTGGGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AssemblyC74_contig_54/477‑611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.