Predicted mutation
evidence seq id position mutation annotation gene description
RA AssemblyC74_contig_12 59,248 C→T A30A (GCG→GCA rasttk_feature_annotation_tool=annotate_proteins_km er_v2 ← Putative peptidoglycan bound protein (LPXTG motif) Lmo2178 homolog

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AssemblyC74_contig_1259,2480CT97.8% 824.3 / 0.4 276A30A (GCG→GCArasttk_feature_annotation_tool=annotate_proteins_km er_v2Putative peptidoglycan bound protein (LPXTG motif) Lmo2178 homolog
Reads supporting (aligned to +/- strand):  ref base C (0/6);  new base T (107/161);  total (109/167)
Fisher's exact test for biased strand distribution p-value = 8.46e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 276 total aligned reads displayed.

TTCTTTCGTCAATTCTACCACCGCTGTCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCCAATTCATACCCCGTTGGCGCTTGGGTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATCGCCAGTTTTCCATCTGCTCCTGTGGTTAGACCTGACTGCAGAACGGTTCCATTGGCATCTTGTAACTCAAAAACAGCTCCTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAC  >  AssemblyC74_contig_12/59116‑59337
                                                                                                                                    |                                                                                                                                  
      cGTCAATTCTCCCACCGCTGTCTGACTTCTTTCGCACTCAAACTCGATTGGTGTCGCATACAATTCATACCCCGTTGGCTCTTGTGTTTATACCAGATGATAGACTCCTGGTTCTAAGCCGTCAATCGCCAGttt                                                                                                                            <  1:3024191/135‑1 (MQ=21)
       gttaaTTCTACCACCGCTGTCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGttt                                                                                                                            >  1:244628/4‑134 (MQ=21)
           cttCTACCTCCGCTGTCTGACTTCTTTCGATCTCAAACTCGTTTGGAGTCGCTTCTAATTCATAAGGTCTTGGCGCTTGTGTTTATACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAt                                                                                                                       <  2:358880/134‑1 (MQ=18)
                accaccGATGTCTGACTTCTTTCTATCTCAAACTCGTTTGGTGTCGGATCCAATTCATTCCCCGTTGTCGCTTGTGTTTCTACCAGCTGATAGACTCCTGGTGCTTAGCGGTCAATCGCCAGTTTTCCATCTgat                                                                                                                  <  2:371482/135‑3 (MQ=18)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         <  2:2363445/135‑1 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         <  1:2305135/135‑1 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         <  1:2590308/135‑1 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         <  1:926803/135‑1 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         >  2:1009791/1‑135 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         <  2:2065904/135‑1 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         <  2:3092326/135‑1 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         >  2:3695673/1‑135 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         <  2:688740/135‑1 (MQ=17)
                         gTCTGACTTCTTTCGATCTCAAACTCGATCGGTGTCGAATCTATTTCTTACACTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTTATAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         <  2:2723913/135‑1 (MQ=12)
                            tGACTTCTTTCGATTTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTcc                                                                                                                         >  2:3857239/1‑116 (MQ=17)
                            tGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAa                                                                                                       <  1:3569315‑M1/134‑2 (MQ=255)
                            tGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCAt                                                                                                                       <  2:2747652/118‑1 (MQ=17)
                            tGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCAt                                                                                                                       >  1:2747652/1‑118 (MQ=17)
                            tGACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAg                                                                                                       <  2:872431/134‑1 (MQ=17)
                             gACTTCTTTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTATCCATCTTCTCCTGTAGTTAGAc                                                                                                     >  2:1822166/1‑135 (MQ=14)
                               cttcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccg                                                                                                   >  1:804391‑M1/1‑130 (MQ=255)
                                ttcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccg                                                                                                   <  2:3335521‑M1/134‑6 (MQ=255)
                                 tcttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggt                                                                                                 <  2:759287‑M1/135‑8 (MQ=255)
                                 tcttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAccggt                                                                                                 <  1:988865/135‑4 (MQ=14)
                                  cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                <  1:775198/135‑5 (MQ=17)
                                  cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                <  1:616209/135‑5 (MQ=17)
                                  cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                <  2:11935/135‑5 (MQ=17)
                                  cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                <  2:1269774/135‑5 (MQ=17)
                                  cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                <  1:2127340/135‑5 (MQ=14)
                                  cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                <  1:3711145/135‑5 (MQ=14)
                                  cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                <  2:1411949/135‑5 (MQ=14)
                                  cttTCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTACTGTAGTTAaacaggtt                                                                                                >  1:543897‑M1/1‑127 (MQ=255)
                                  cttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                <  2:2097559/135‑5 (MQ=14)
                                  cttTCGATCTCAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCTAGTTTTCCATCTTCTCCTGTAGTTAGAccggtt                                                                                                <  1:633868/135‑5 (MQ=14)
                                     tCGATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         >  2:628362/1‑123 (MQ=14)
                                       gATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         >  1:3762522/1‑121 (MQ=14)
                                       gATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         <  2:3762522/121‑1 (MQ=14)
                                       gATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggt                                                                                                 <  2:790687/129‑4 (MQ=14)
                                       gATCTCAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAGAccggt                                                                                                 >  1:790687/1‑126 (MQ=14)
                                           tcAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAtcttct                                                                                                                  <  1:3588742/108‑1 (MQ=11)
                                           tcAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAt                                                                                                                       >  1:3408581/1‑103 (MQ=14)
                                           tcAAACTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAt                                                                                                                       <  2:3408581/103‑1 (MQ=14)
                                           tcAAACTCGATCGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         >  1:1047161/1‑117 (MQ=11)
                                             aaaCTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTcc                                                                                                                         <  1:2268358/99‑1 (MQ=14)
                                             aaaCTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTcc                                                                                                                         >  2:2268358/1‑99 (MQ=14)
                                                cTCGATTGGTGTCGCATCTAATTCATACCCTATTGGCGCTTGAGTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGtt                                                                                                         >  2:259139/1‑112 (MQ=11)
                                                                tCCAATTCATACCCCGTTGGCGCCTGCGTTTCTAACAGCTGATTCACTCCTGGAGATAATCCGTCTATCGCCATATTTCGATCTGATACTTTGGTTATACAGGAAGGCAGAACGGTTCCATTGGCATCTTGTaa                                                                   <  2:419512/134‑1 (MQ=2)
                                                                 ctaaTTCATACCCTATTGGCGCTTGGGTTTCTACCAGCTGATATGTTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCAt                                                                                                                       <  1:3098514/79‑1 (MQ=11)
                                                                         tACCCCGTTGGCGCTTGGGTTTTTACCAGCTGATTCACTCCTGGTGCTACTCCGTCAGTCGCCAGTCGGCACCCTGATACGGGGTTTAGACCCGACTGCAGAACGGTTCCATTGGCATCTTGTAACTCAAAAACa                                                         <  2:2105161/135‑1 (MQ=14)
                                                                                           gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                        >  1:3199644‑M1/1‑70 (MQ=255)
                                                                                           gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                        >  1:2823650‑M1/1‑70 (MQ=255)
                                                                                           gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaa                                               >  1:2493817‑M1/1‑70 (MQ=255)
                                                                                           gTTTCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCATCTCCAGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttc                                        >  1:435783‑M1/1‑70 (MQ=255)
                                                                                            tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                       <  2:3103161‑M1/134‑66 (MQ=255)
                                                                                            tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                       <  1:1427090‑M1/134‑66 (MQ=255)
                                                                                            tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                       <  1:460210‑M1/134‑66 (MQ=255)
                                                                                            tttCTACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttca                                       <  2:56263‑M1/134‑66 (MQ=255)
                                                                                                tACCAGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccact                                  <  2:2844951‑M1/135‑71 (MQ=255)
                                                                                                    aGCTGATATGCTCCTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcct                              <  2:1694411‑M1/135‑75 (MQ=255)
                                                                                                        gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                             <  2:3469862‑M1/126‑76 (MQ=255)
                                                                                                        gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                             <  1:1190083‑M1/126‑76 (MQ=255)
                                                                                                        gatatgctcctggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgcctt                             <  2:3048554‑M1/126‑76 (MQ=255)
                                                                                                         atatgctcctgGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagc                         >  1:1525703‑M1/6‑56 (MQ=255)
                                                                                                           atgctccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagca                        <  1:3152774‑M1/131‑81 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                   <  1:1291498‑M1/134‑86 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                   <  2:2551286‑M1/134‑86 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                   <  2:2529789‑M1/134‑86 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                   <  2:2185963‑M1/134‑86 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                   <  1:493520‑M1/134‑86 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                   <  1:191308‑M1/134‑86 (MQ=255)
                                                                                                                ccTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgttt                   <  2:2194768‑M1/134‑86 (MQ=255)
                                                                                                                 cTGGTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaa                 >  1:3244825‑M1/1‑48 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTCatccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt               >  2:1741491‑M1/1‑46 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt               >  1:1079783‑M1/1‑46 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                                 >  1:1298470‑M1/1‑46 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                                 <  2:1298470‑M1/101‑56 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaaca                                                         >  1:1177244‑M1/1‑46 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttc                                                                        <  2:3569424‑M1/78‑33 (MQ=255)
                                                                                                                   ggTGCTAAACCGTCAATTGCCAGTTTTCCATCATCTCCTGTAGTTAaaacggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctcatagaaggacttcaccactgccatcagcaagattaata               >  2:3246461‑M1/1‑46 (MQ=255)
                                                                                                                    gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta              <  2:1878473‑M1/135‑91 (MQ=255)
                                                                                                                    gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta              >  1:261053‑M1/1‑45 (MQ=255)
                                                                                                                    gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta              <  1:723362‑M1/135‑91 (MQ=255)
                                                                                                                    gTGCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta              >  1:867712‑M1/1‑45 (MQ=255)
                                                                                                                    gTGCTAAACCGTCAATTGCCAGTTTTCCATATTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatta              <  1:3310632‑M1/135‑91 (MQ=255)
                                                                                                                      gctagaccgtcaatTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagca                        <  2:1863192‑M1/117‑81 (MQ=255)
                                                                                                                      gctagaccgtcaatTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagca                        >  1:1863192‑M1/7‑43 (MQ=255)
                                                                                                                      gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag             >  1:3309793‑M1/1‑43 (MQ=255)
                                                                                                                      gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattag             <  2:509440‑M1/134‑92 (MQ=255)
                                                                                                                      gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaatt               <  1:2181415‑M1/132‑90 (MQ=255)
                                                                                                                      gCTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                                 <  2:1991559‑M1/98‑56 (MQ=255)
                                                                                                                       cTAAACCGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagtt           >  2:742804‑M1/1‑42 (MQ=255)
                                                                                                                            ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaac       >  2:2448265‑M1/1‑37 (MQ=255)
                                                                                                                            ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaac       >  1:1616223‑M1/1‑37 (MQ=255)
                                                                                                                            ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaac       >  1:2160110‑M1/1‑37 (MQ=255)
                                                                                                                            ccGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttg                                                 <  2:21590‑M1/92‑56 (MQ=255)
                                                                                                                             cGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac     <  2:1122361‑M1/135‑100 (MQ=255)
                                                                                                                             cGTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac     >  1:3825957‑M1/1‑36 (MQ=255)
                                                                                                                              gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacacc    <  1:157884‑M1/135‑101 (MQ=255)
                                                                                                                              gTCAATTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacac     >  2:2411317‑M1/1‑35 (MQ=255)
                                                                                                                                 aaTTGCCAGTTTTCCATCTTCTCCTGTAGTTAaaccggtttgtagcgtttctccttctcggttctgtaactcaaaaacagctccttgaaggacttcaccactgccttcagcatgtttaattagttcaacaccac  <  1:2072819‑M1/134‑103 (MQ=255)
                                                                                                                                    |                                                                                                                                  
TTCTTTCGTCAATTCTACCACCGCTGTCTGACTTCTTTCGATCTCAAACTCGATTGGTGTCGCATCCAATTCATACCCCGTTGGCGCTTGGGTTTCTACCAGCTGATACACTCCTGGTGCTAAGCCGTCAATCGCCAGTTTTCCATCTGCTCCTGTGGTTAGACCTGACTGCAGAACGGTTCCATTGGCATCTTGTAACTCAAAAACAGCTCCTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAC  >  AssemblyC74_contig_12/59116‑59337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: