| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_22 | 1 = | 0 (0.000) | 200 (0.610) | 75/258 | 0.2 | 100% | coding (1/168 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_41 | = 437 | 0 (0.000) | coding (435/435 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
Only 100 of 200 total aligned reads displayed.
TTGGGAACCAAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < TrimmedAssembly_T66_contig_22/135‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGCGG < TrimmedAssembly_T66_contig_41/437‑308 tttGGAAACAATGGTTACCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCT < 2:1528377/133‑1TTGGGAACCAAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCT < 1:1500298/136‑1 ACCAAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTA > 1:982659/1‑136 ACCAAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTA > 2:1636101/1‑136 ACCAAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTA > 2:164417/1‑136 ACCAAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACT < 2:268885/135‑1 ACCAAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACT < 2:2040939/135‑1 ACCAAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACT < 1:1300477/135‑1 CAAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGA < 1:356960/136‑1 AAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAA < 1:2104798/136‑1 AAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAA < 1:2209908/136‑1 AAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAA < 1:1673865/136‑1 AAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAA < 1:1636101/136‑1 AAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAA < 1:1202995/136‑1 TTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGC < 2:1572316/134‑1 TTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGC < 1:1113265/134‑1 TTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGC < 1:1691798/134‑1 TCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCAC < 2:1833370/135‑1 ATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTA > 2:2136478/1‑135 AAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCT < 2:1949439/136‑1 TTCAAAGGAGCTATTTAAGTCCTTGGCAGTTCGGTTAGGGTCTTTGATGGCACATAGAAGTCGGGTCTTAAGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTAATTCC < 1:1104398/136‑1 AAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAA > 1:1591466/1‑136 AAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAA > 2:841852/1‑136 CGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGA < 1:1859687/134‑1 TTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGC < 2:1760659/108‑1 TTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGC > 1:1760647/1‑108 TAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCT < 1:1398151/136‑1 AGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAA < 2:982659/136‑1 AGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACAAGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAA < 2:1220667/136‑1 CTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAA < 2:40111/98‑1 CTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAA > 1:40111/1‑98 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 1:1525124/1‑136 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 1:989952/1‑136 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 2:2237932/1‑136 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 2:643453/1‑136 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 2:2199504/1‑136 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 1:441350/1‑136 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 1:1485847/1‑136 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 1:1148027/1‑136 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 1:2239662/1‑136 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 1:121988/1‑136 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATT > 2:1932414/1‑136 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGAT < 2:812468/135‑1 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGAT < 2:1037807/135‑1 CAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGACGGGTCTTACGTTCTACGAATGTAACCAGACAAGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCACAGACCAAAAGCTAACCGATGAat > 2:1413937/1‑134 AGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTA > 2:648525/1‑136 GGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGT > 2:1604615/1‑136 GGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGT > 1:2353548/1‑136 GGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGAATCTACATCCCAATGACAAAAAGCTAACCGTTTATTAACAGT > 2:929978/1‑136 GGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCAC < 1:1469486/91‑1 GTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTT > 1:905154/1‑136 TTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCTTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGATGATTAACAGTT < 1:1226144/135‑1 GGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTG > 1:410306/1‑136 GGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGG < 2:2444822/135‑1 GCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGC < 2:2184032/135‑1 GATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGT > 1:2111471/1‑136 TGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTC < 2:441350/136‑1 TGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTC > 1:336028/1‑136 TGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTC > 2:144807/1‑136 CCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATG > 2:563532/1‑136 CATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGG > 2:339098/1‑136 CATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGG > 1:2416350/1‑136 CATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGG > 2:73427/1‑136 CATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGG > 2:492593/1‑136 TAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAA > 1:230999/1‑136 AGAAGTCGGGTCTTACGTTCTACGCATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAG < 1:161426/136‑1 AGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAG < 1:2082508/136‑1 AGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAG < 2:1142461/136‑1 GGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTT > 1:921266/1‑136 GGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTT > 1:1358083/1‑136 TTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAA > 2:1305090/1‑136 TCTACGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTC < 1:1021589/135‑1 TCTACGAATGTAACCAGACATGATAGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTC < 1:1049155/135‑1 CGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACG > 2:1901764/1‑136 CGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACG > 2:541299/1‑136 CGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACG < 1:973653/136‑1 CGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACG > 2:1144461/1‑136 CGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTC > 1:110019/1‑131 CGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTC < 2:110019/131‑1 CGAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCG < 1:645561/100‑1 GAATGTAACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGA > 2:1479214/1‑136 GAATGTAACCAGACATGATCGTGACTCAACTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTTTAAATTTCCCCCGA > 2:1708401/1‑136 AACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTC < 1:396321/135‑1 AACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTC < 1:1582353/135‑1 AACCAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCACACGATTTTC > 2:751681/1‑135 CCAGACATGATCGTGACTCACCTCGACTAGAAAGC < 2:864899/35‑1 CCAGACATGATCGTGACTCACCTCGACTAGAAAGC > 1:864899/1‑35 CAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTC < 2:1656533/136‑1 CAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTC < 1:307042/136‑1 CAGACATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTC < 1:73427/136‑1 CATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAACAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCA < 1:806092/133‑1 CATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACT < 2:1759967/135‑1 CATGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACT < 1:1413937/135‑1 TGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGG > 2:1327768/1‑136 TGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTC < 1:549715/130‑1 TGATCGTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTC > 2:549715/1‑130 GTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTG > 1:118759/1‑136 GTGACTCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTG > 1:2125309/1‑136 TCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGACGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGTGG > 2:2373173/1‑135 TCACCTCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGTGG > 2:594254/1‑135 TTGGGAACCAAAGGTTCCCATAAACTTTTCAAAGGCGCTATTTAAGGCCTTGGCAGTTCGGTTAGGGGCTTTGATGGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < TrimmedAssembly_T66_contig_22/135‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGACTAGAAAGCACCGTATCTACTTCCCAATGACCAAAAGCTAACCGTTGATTAACAGTTGTTGGCCGTTGTTCGATGGAAGTCCCACTTGTAAATTTCCCACGATTTTCGCTCACTCGGTGCTGGCGG < TrimmedAssembly_T66_contig_41/437‑308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |