| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_42 | 1 = | 0 (0.000) | 90 (0.250) +CTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAA |
34/144 | 0.4 | 100% | coding (318/318 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Transposase, IS4 family |
| ? | TrimmedAssembly_T66_contig_6 | 1 = | 0 (0.000) | intergenic (–/+72) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Pyruvate oxidase (EC 1.2.3.3) | |||||
Only 100 of 142 total aligned reads displayed.
TTGGCAAGATGAAGGCTTCTTTACATTTCAATCGATTCTCGGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < TrimmedAssembly_T66_contig_42/107‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGTTCGCGTCATATTT > TrimmedAssembly_T66_contig_6/1‑135 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| tttGCAAGCTGAAGGCGTCTTGACATCTCCATCGAGTCTCGGTGCGAGGTTTCGACAAGGACACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACAGTATGAAAGTGGTCACGGTAGGGACCTACTTTAAAAc < 2:1679075/133‑2 tgtCAAGATGAAGGATTCTTTACATTTCAATCGATTCTCGGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCAGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAAT < 2:1581872/133‑1 GTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTT > 1:594255/1‑136 TTCGACAAGGTCACCAAGGAAGCCGGCATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACATTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 1:890096/135‑1 TTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGCAACTGGTCACGGTAGGGACCAACTTTAAACATCCAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 1:752468/135‑1 TTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 2:127164/135‑1 TTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 1:1309948/135‑1 TTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 2:759193/135‑1 TTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATAAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 2:2251810/135‑1 TCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAATTGGTCACGGTAGGGACAAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCC < 2:739319/136‑1 TCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 1:1687859/134‑1 TCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACATTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCC < 1:1871474/136‑1 GACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCAT > 1:429938/1‑136 cacGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTCTGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAACCCAAAATTCGTTTTCTCGTCCCATT < 1:174131/132‑1 CAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATT < 1:1397558/135‑1 CAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATT < 2:876005/135‑1 CACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 2:1675839/136‑1 CACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 2:1167611/136‑1 CACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 2:96526/136‑1 CACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 2:920138/136‑1 CACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATACGTTTTCTCGTCCCATTTGCTTAT < 1:883964/136‑1 CACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACATTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT < 2:776595/136‑1 ACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGTTCACGGTAGGGACCAACTTTAAAAATCAAAGGAGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT > 2:1698348/1‑135 ACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAACATTCGTTTTCTCGTCCCATTTGCTTAT > 2:199107/1‑135 ACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT > 2:1610665/1‑135 ACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTAT > 1:1763120/1‑135 AAGGAAGCCTGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACATTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAG < 1:979077/136‑1 AAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTACCATTTGCTTATACAt > 1:386709/1‑135 AGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGA < 1:2223592/136‑1 GCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCC > 2:300628/1‑116 GCCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCC < 1:300628/116‑1 CCGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAG > 1:2301572/1‑136 ctGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTA < 2:651913/132‑1 CGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGT > 2:266170/1‑136 CGGAATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTA < 2:1710959/134‑1 ATCGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATG < 1:266170/136‑1 CGTAATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTC < 2:1750236/136‑1 AATACTGGCGTTAAACATTATGCAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCAC < 1:182318/135‑1 ATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAACCCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG < 2:1686692/136‑1 ATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG < 1:351894/136‑1 ATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG < 2:448006/136‑1 ATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG < 2:2301572/136‑1 ATACTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAG < 2:1343888/136‑1 CTGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCC > 1:1568203/1‑135 TGGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTC < 2:439951/136‑1 GGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCT < 1:942072/136‑1 GGCGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCT < 1:1955606/136‑1 CGTTAAACATTATGACACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAACCCAAACTTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTC < 2:1021085/135‑1 CGTTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTC < 1:1651944/135‑1 TTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGT > 1:1440424/1‑135 TTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGT > 2:2133604/1‑135 TTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTC < 1:1379916/88‑1 TTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTC > 2:1379916/1‑88 TTAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCATAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGT > 2:978369/1‑135 TAAACATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTC < 1:2036271/136‑1 CATTATGACACTGGTCACGGTAGGGACCAACTTTAAACATCAACGGCGCAAGCAAATGGGCCGAGACACCAAAATACGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACAC < 2:1047613/136‑1 CATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCAC > 2:1268617/1‑134 CATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC > 2:740922/1‑88 CATTATGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC < 1:740922/88‑1 TGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACT < 2:2015321/136‑1 TGAAACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACT < 2:502724/136‑1 AACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGATAGTTATGTCACAGCCTCTCGTTCACACTGACTAT < 2:562977/135‑1 AACTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAACCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTAT < 2:663179/135‑1 CTGGTCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCG < 2:2228920/136‑1 TCACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGT > 2:146781/1‑136 CACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTT < 2:2360478/136‑1 CACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTT < 1:2398146/136‑1 CACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTT < 1:287019/136‑1 CACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTT < 1:1698348/136‑1 ACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTG > 1:1745646/1‑136 ACGGTAGGGACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTC > 2:309095/1‑72 GACCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCT < 1:2209583/135‑1 CCAACTTTAAAAATCAATGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGA > 2:1773457/1‑136 CCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGA > 1:1477731/1‑136 CCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTAT > 2:1180050/1‑89 CCAACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTAT < 1:1180050/89‑1 AACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAA < 1:1795604/136‑1 AACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAA < 2:1763120/136‑1 AACTTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAA < 1:2412471/136‑1 TTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 2:774050/1‑135 TTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 1:2222220/1‑135 TTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 2:2270234/1‑135 TTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 1:234662/1‑135 TTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 2:1549921/1‑135 TTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 1:397064/1‑135 TTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 2:1844622/1‑135 TTTAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCAC < 1:790190/103‑1 TAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 2:2079545/1‑133 TAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATA > 1:457119/1‑133 TAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTAT > 2:117954/1‑110 TAAAAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTAT < 1:117954/110‑1 AAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGT < 2:1865923/136‑1 AAATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGT < 1:2040180/136‑1 ATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAG < 2:1083441/66‑1 ATCAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAG > 1:1083441/1‑66 aAAAGGCGTAAGCAAATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGT < 1:1129732/135‑1 ATGGGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGTTC < 2:429938/136‑1 GGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGTTCGCG > 1:1431326/1‑136 GGACGAGAAACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGTTCGCG > 1:1015940/1‑136 AACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGTTCGCGTCATATTT > 2:1561353/1‑136 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| TTGGCAAGATGAAGGCTTCTTTACATTTCAATCGATTCTCGGTGCGAGGTTTCGACAAGGTCACCAAGGAAGCCGGAATCGTAATACTGGCGTTAAACATTATGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < TrimmedAssembly_T66_contig_42/107‑1‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCAAAATTCGTTTTCTCGTCCCATTTGCTTATACAGAGGCTAGTTATGTCACAGCCTCTCGTTCACACTGACTATTCGACGTTGAACTCCTTGAAATAACTGGTTAGTGGTTTCAATTCGTTCGCGTCATATTT > TrimmedAssembly_T66_contig_6/1‑135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |