New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? TrimmedAssembly_T66_contig_12 = 949310 (0.000)160 (0.590) 58/258 0.4 100% intergenic (+79/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– hypothetical protein/–
?TrimmedAssembly_T66_contig_35 = 1096 0 (0.000)intergenic (+10/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– Mobile element protein/–

Only 100 of 160 total aligned reads displayed.

GAAAAGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_12/94799‑94931
                                                                                                                                    |                                                                                                                                   
gAAAAGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgg                                                                                                                                   >  2:2388553‑M1/1‑133 (MQ=255)
  aaaGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcg                                                                                                                                >  1:1188211‑M1/1‑131 (MQ=255)
  aaaGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcg                                                                                                                                >  1:776323‑M1/1‑131 (MQ=255)
  aaaGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcg                                                                                                                                >  2:535018‑M1/1‑131 (MQ=255)
  aaaGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggc                                                                                                                                 <  2:1102689‑M1/135‑5 (MQ=255)
         ttGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtc                                                                                                                         <  1:1205504‑M1/136‑13 (MQ=255)
          tGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAAATCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACAAATTGGGGCGGCATTTTGTGTATGgggcgaattgtca                                                                                                                        >  2:151470‑M1/1‑123 (MQ=255)
           gTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTTAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                       <  1:85185‑M1/136‑15 (MQ=255)
           gTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                       <  1:2409173‑M1/136‑15 (MQ=255)
           gTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                       <  1:339828‑M1/136‑15 (MQ=255)
           gTTTGATCCAGCAGGGAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaa                                                                                                                       <  2:952101‑M1/136‑15 (MQ=255)
                   cagcagGTAGCGATACAACCCCAAGTAATGGATTATTCTGAAAAACATATTGAATCACTAACCACTAGTCGCCGATAAATCAACAATAGCCATTGGGGCGGCTTTTTGTGTGTGgggcgaattgtcaaactaagt                                                                                                                >  1:1427347‑M1/1‑114 (MQ=255)
                   cagcagGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagt                                                                                                                >  1:654076‑M1/1‑114 (MQ=255)
                   cagcagGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagt                                                                                                                >  2:260642‑M1/1‑114 (MQ=255)
                    agcagGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgc                                                                                                              >  2:1373609‑M1/1‑113 (MQ=255)
                          tAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaac                                                                                                           <  1:1551600‑M1/133‑27 (MQ=255)
                              gATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttg                                                                                                     >  2:2183675‑M1/1‑103 (MQ=255)
                              gATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggttt                                                                                                      <  2:1710944‑M1/134‑32 (MQ=255)
                              gATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggttt                                                                                                      <  2:2236613‑M1/134‑32 (MQ=255)
                              gATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtc                                                                                                                         <  2:885999‑M1/115‑13 (MQ=255)
                                      cccAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaat                                                                                            <  2:1169524‑M1/136‑42 (MQ=255)
                                      cccAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaat                                                                                            <  1:2222354‑M1/136‑42 (MQ=255)
                                      cccAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaat                                                                                            >  1:1897614‑M1/1‑95 (MQ=255)
                                      cccAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaat                                                                                            >  2:1677419‑M1/1‑95 (MQ=255)
                                          aGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatact                                                                                         >  1:568741‑M1/1‑91 (MQ=255)
                                             aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                     >  2:1194494‑M1/1‑88 (MQ=255)
                                             aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                     >  2:1194282‑M1/1‑88 (MQ=255)
                                             aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                     <  1:1487337‑M1/136‑49 (MQ=255)
                                             aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                     >  1:1831439‑M1/1‑88 (MQ=255)
                                             aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                     >  1:2172933‑M1/1‑88 (MQ=255)
                                             aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTGTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                     >  1:1363532‑M1/1‑88 (MQ=255)
                                             aaTGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTCTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcat                                                                                     >  2:886475‑M1/1‑88 (MQ=255)
                                                  aTAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggg                                                                                >  2:1448158‑M1/1‑83 (MQ=255)
                                                  aTAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggg                                                                                >  2:1295919‑M1/1‑83 (MQ=255)
                                                   tAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatgggg                                                                               >  1:1811551‑M1/1‑82 (MQ=255)
                                                     aTTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                             <  1:2388553‑M1/136‑57 (MQ=255)
                                                     aTTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                             <  2:568741‑M1/136‑57 (MQ=255)
                                                     aTTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                             <  1:535018‑M1/136‑57 (MQ=255)
                                                       tCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttc                                                                           >  1:460002‑M1/1‑78 (MQ=255)
                                                         tGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaa                                                                                             >  2:603498‑M1/1‑76 (MQ=255)
                                                              aaCATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagttt                                                                    >  2:1100126‑M1/1‑71 (MQ=255)
                                                                      gAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacacttt                                                            >  1:565196‑M1/1‑63 (MQ=255)
                                                                      gAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacacttt                                                            <  1:1373609‑M1/136‑74 (MQ=255)
                                                                      gAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacacttt                                                            <  2:1576787‑M1/136‑74 (MQ=255)
                                                                      gAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacacttt                                                            >  1:2324953‑M1/1‑63 (MQ=255)
                                                                        aTAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgc                                                          <  2:535517‑M1/136‑76 (MQ=255)
                                                                        aTAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgc                                                          <  1:1417799‑M1/136‑76 (MQ=255)
                                                                        aTAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttg                                                           <  2:394941‑M1/135‑75 (MQ=255)
                                                                             taacCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgagga                                                     <  2:1811551‑M1/136‑81 (MQ=255)
                                                                             taacCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgagg                                                      >  2:402103‑M1/1‑56 (MQ=255)
                                                                               acCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacg                                                   >  2:1317926‑M1/1‑54 (MQ=255)
                                                                                  aCTAGTCGCCGATAAATCAACAATACCACTTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                             <  1:671090‑M1/107‑57 (MQ=255)
                                                                                  aCTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtt                                                                             >  2:671090‑M1/1‑51 (MQ=255)
                                                                                     aGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatt                                             <  1:313236‑M1/136‑89 (MQ=255)
                                                                                     aGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatt                                             <  2:2330942‑M1/136‑89 (MQ=255)
                                                                                        cGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgattta                                           <  2:675069‑M1/135‑91 (MQ=255)
                                                                                         gCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgattta                                           >  2:29944‑M1/1‑44 (MQ=255)
                                                                                            gATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaact                                        >  1:436545‑M1/1‑41 (MQ=255)
                                                                                            gATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaat                                                                                            <  2:2222451‑M1/82‑42 (MQ=255)
                                                                                              tAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgctt                                    >  2:2310428‑M1/1‑39 (MQ=255)
                                                                                              tAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgctt                                    >  2:2264809‑M1/1‑39 (MQ=255)
                                                                                              tAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgctt                                    >  2:2066448‑M1/1‑39 (MQ=255)
                                                                                              tAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttc                                                                                       <  2:2393136‑M1/85‑47 (MQ=255)
                                                                                               aaaTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttt                                   <  1:1267355‑M1/136‑99 (MQ=255)
                                                                                               aaaTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttt                                   <  2:1600987‑M1/136‑99 (MQ=255)
                                                                                                 aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                 <  1:1156196‑M1/136‑101 (MQ=255)
                                                                                                 aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                 <  1:90881‑M1/136‑101 (MQ=255)
                                                                                                 aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                 <  1:29944‑M1/136‑101 (MQ=255)
                                                                                                 aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                 <  1:953159‑M1/136‑101 (MQ=255)
                                                                                                 aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                 <  2:2427271‑M1/136‑101 (MQ=255)
                                                                                                 aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                 <  2:1539024‑M1/136‑101 (MQ=255)
                                                                                                 aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                 <  1:1194494‑M1/136‑101 (MQ=255)
                                                                                                 aTCAACAATACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                 <  2:1433572‑M1/136‑101 (MQ=255)
                                                                                                        aTACCACTTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaacatacttcatatggggtttcatagttttacactttgcgaggacgttgatttaactgcttttggcagtgt                          <  2:767478‑M1/136‑108 (MQ=255)
                                                                                                        aTACCACTTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                          <  1:2102189‑M1/136‑108 (MQ=255)
                                                                                                        aTACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                          <  1:2183675‑M1/136‑108 (MQ=255)
                                                                                                        aTACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                          <  1:2102215‑M1/136‑108 (MQ=255)
                                                                                                        aTACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                          <  2:154846‑M1/136‑108 (MQ=255)
                                                                                                        aTACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                          <  1:1706952‑M1/136‑108 (MQ=255)
                                                                                                        aTACCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                          <  2:776323‑M1/136‑108 (MQ=255)
                                                                                                          aCCAATTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttt                                   >  1:1333375‑M1/1‑27 (MQ=255)
                                                                                                             aaTTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaac                     <  2:2172933‑M1/136‑113 (MQ=255)
                                                                                                             aaTTGGGGCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaac                     <  2:245229‑M1/136‑113 (MQ=255)
                                                                                                                tGGGGCGGCTTTTTGTGTATGgggcgtattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtc                  <  1:865859‑M1/136‑116 (MQ=255)
                                                                                                                 ggggCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgt                   >  2:797383‑M1/1‑20 (MQ=255)
                                                                                                                 ggggCGGCTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttg                                 <  1:1978751‑M1/120‑101 (MQ=255)
                                                                                                                   ggcggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcct                <  2:1739907‑M1/135‑118 (MQ=255)
                                                                                                                   ggcggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcct                <  1:1317926‑M1/135‑118 (MQ=255)
                                                                                                                   ggcggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaaagtcct                <  1:1947675‑M1/135‑118 (MQ=255)
                                                                                                                      ggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgt              >  2:957018‑M1/1‑15 (MQ=255)
                                                                                                                      ggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgt              >  2:1414019‑M1/1‑15 (MQ=255)
                                                                                                                      ggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgt              >  1:836547‑M1/1‑15 (MQ=255)
                                                                                                                      ggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaac                     <  1:925045‑M1/127‑113 (MQ=255)
                                                                                                                      ggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaac                     >  2:925045‑M1/1‑15 (MQ=255)
                                                                                                                      ggcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgt                          >  1:1560801‑M1/1‑15 (MQ=255)
                                                                                                                       gcTTTTTGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgt              >  2:1935‑M1/1‑14 (MQ=255)
                                                                                                                          ttttGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgttctgta        <  1:2424634‑M1/136‑126 (MQ=255)
                                                                                                                            ttGTGTATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgttctgtata      <  1:797383‑M1/136‑128 (MQ=255)
                                                                                                                                gtATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgttctgtataatta  >  2:661558‑M1/1‑5 (MQ=255)
                                                                                                                                gtATGgggcgaattgtcaaactaagtgcaacggtttgtcaaaaaatacttcatatggggtttcatagtttaacactttgcgaggacgttgatttaactgcttttggcagtgttcaacgtcctgttctgtataatta  >  2:135432‑M1/1‑5 (MQ=255)
                                                                                                                                    |                                                                                                                                   
GAAAAGCAATTGTTTGATCCAGCAGGTAGCGATACAACCCCAAGTAATGGATAATTCTGAAAAACATATTGAATAACTAACCACTAGTCGCCGATAAATCAACAATACCAATTGGGGCGGCTTTTTGTGTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_12/94799‑94931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.