| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_14 | = 91033 | 0 (0.000) | 190 (0.640) | 64/258 | 0.6 | 100% | intergenic (+263/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_35 | 1 = | 0 (0.000) | intergenic (–/‑99) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
Only 100 of 191 total aligned reads displayed.
CCATAATGCAGCTAATAATCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_14/90898‑91033 | ccATAATGCAGCTAATAATCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCg > 1:871920/1‑136 (MQ=255) aataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaa < 2:893326‑M1/136‑14 (MQ=255) aataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaa < 2:1846860‑M1/136‑14 (MQ=255) aataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaa < 1:2078215‑M1/136‑14 (MQ=255) aataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaa > 1:2080687‑M1/1‑123 (MQ=255) aataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaa < 2:2326500‑M1/136‑14 (MQ=255) aataatCACTTACATTCATAGACACCCCCAAGACTGACGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCATGCCCACTACATCCGCTGATGTGGTGGCTTTTTGAGTGCCGggcgaatttacaa < 2:590241‑M1/136‑14 (MQ=255) ataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaat > 1:1883165‑M1/1‑122 (MQ=255) ataatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTGTCCTTCTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTGTTATTTCCGggcgactttacaat > 2:737228‑M1/1‑122 (MQ=255) aatCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattg > 1:845755‑M1/1‑120 (MQ=255) atCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattga > 2:1799232‑M1/1‑119 (MQ=255) tCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaa > 2:2374741‑M1/1‑118 (MQ=255) cattcatAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaac < 2:2185543‑M1/136‑26 (MQ=255) tAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaag < 2:1295831‑M1/136‑32 (MQ=255) cTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaa > 1:1929757‑M1/1‑101 (MQ=255) tCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaa < 2:2222458‑M1/136‑37 (MQ=255) cccccAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaa < 2:468098‑M1/136‑38 (MQ=255) ccccAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaa < 2:413666‑M1/136‑39 (MQ=255) ccccAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTATGATGTTTCCTACTCCTTGACCCCTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaa < 2:484012‑M1/136‑39 (MQ=255) cccAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaa > 1:2121505‑M1/1‑97 (MQ=255) cccAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaa > 1:477548‑M1/1‑97 (MQ=255) cccAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaa > 2:1103020‑M1/1‑97 (MQ=255) cccAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaag > 2:820746‑M1/1‑97 (MQ=255) cccAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTGTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaa > 2:2138145‑M1/1‑97 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGTTGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata > 2:1387541‑M1/1‑95 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata < 2:2165011‑M1/136‑42 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata < 1:1063669‑M1/136‑42 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata > 1:1786013‑M1/1‑95 (MQ=255) cAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTGATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaata > 2:1683735‑M1/1‑95 (MQ=255) cTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccc < 2:2285763‑M1/136‑47 (MQ=255) cTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccc < 2:64811‑M1/136‑47 (MQ=255) cTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccc < 1:373687‑M1/136‑47 (MQ=255) tgatgaATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccca < 2:209777‑M1/136‑48 (MQ=255) tgaAGGGGGTTCATCATAGCCCCCTCTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGTTGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccata < 1:1945830‑M1/135‑50 (MQ=255) gaATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccatacc < 1:160874‑M1/136‑52 (MQ=255) gaATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccatacc > 1:1646388‑M1/1‑85 (MQ=255) aaTGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccg > 2:1708975‑M1/1‑84 (MQ=255) ggTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtag > 2:1833280‑M1/1‑79 (MQ=255) atcaAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatat > 1:1811636‑M1/1‑74 (MQ=255) atcaAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatat > 2:1014894‑M1/1‑74 (MQ=255) atcaAAGCCCCCACTTTGATGTTGCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaactcaaagtaaaaaaataaacccataccgggtagaatat > 2:1435073‑M1/1‑74 (MQ=255) aaaGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtt > 1:437153‑M1/1‑71 (MQ=255) aaaGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtt > 2:1193037‑M1/1‑71 (MQ=255) aaaGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccc > 1:312836‑M1/1‑71 (MQ=255) ccccACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacg > 1:1954798‑M1/1‑66 (MQ=255) ccccACTTTGATGTTGCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacacttgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacg > 2:2410111‑M1/1‑66 (MQ=255) ccACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacga > 1:1454170‑M1/1‑64 (MQ=255) ccACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacga > 1:1888778‑M1/1‑64 (MQ=255) ccACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacga > 1:2433435‑M1/1‑64 (MQ=255) tttCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccc < 1:513639‑M1/99‑47 (MQ=255) tttCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaaccc > 2:513639‑M1/1‑53 (MQ=255) ttCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaa < 1:1795098‑M1/136‑85 (MQ=255) ttCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaa < 1:556283‑M1/136‑85 (MQ=255) cTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattc < 1:1511526‑M1/136‑88 (MQ=255) tACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcg > 1:993600‑M1/1‑48 (MQ=255) tACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcg > 2:332438‑M1/1‑48 (MQ=255) tACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcg > 2:117811‑M1/1‑48 (MQ=255) tACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcg > 1:589178‑M1/1‑48 (MQ=255) aCTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaaataaacccataccgggtagaatatgtttaacgtccaaatcaatcaattcg > 2:1949229‑M1/1‑47 (MQ=255) tCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgagg < 1:2247405‑M1/136‑92 (MQ=255) tCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgagg < 1:1091418‑M1/136‑92 (MQ=255) tCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTATATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgagg < 2:2050499‑M1/136‑92 (MQ=255) ccTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggt < 1:114296‑M1/136‑93 (MQ=255) gACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatcc > 1:2318412‑M1/1‑40 (MQ=255) gACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatcc > 2:1248080‑M1/1‑40 (MQ=255) gACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatcc > 2:305392‑M1/1‑40 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg < 1:1415054‑M1/136‑99 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg < 1:1014894‑M1/136‑99 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg < 2:1892511‑M1/136‑99 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg > 1:75459‑M1/1‑38 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg < 1:794886‑M1/136‑99 (MQ=255) ccACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgca < 1:2013450‑M1/61‑24 (MQ=255) cTACATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtat < 2:1466817‑M1/136‑102 (MQ=255) cTACATCCGCTGATGTGGTGGCATTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtat < 2:1776528‑M1/136‑102 (MQ=255) cATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgactttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatga > 2:293129‑M1/1‑32 (MQ=255) cATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatga > 1:31010‑M1/1‑32 (MQ=255) cATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatga > 2:1637062‑M1/1‑32 (MQ=255) cATCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccat < 2:197750‑M1/80‑49 (MQ=255) aTCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatga > 2:25734‑M1/1‑31 (MQ=255) aTCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaataaatcaattagaggtatccggtatga > 2:1884879‑M1/1‑31 (MQ=255) aTCCGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaa < 1:2180871‑M1/44‑14 (MQ=255) cGCTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctat < 1:300068‑M1/136‑109 (MQ=255) cTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataa > 2:2226645‑M1/1‑26 (MQ=255) cTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataa > 1:2375126‑M1/1‑26 (MQ=255) cTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataa > 1:1269030‑M1/1‑26 (MQ=255) cTGATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgg > 1:176055‑M1/1‑26 (MQ=255) gATGTGGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatacggtatgagctataaac > 1:1190562‑M1/1‑24 (MQ=255) tgtgGTGGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaaca < 2:1269068‑M1/135‑114 (MQ=255) gtggtgGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatc < 2:2437683‑M1/136‑116 (MQ=255) gtggtgGCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaaca > 2:533236‑M1/1‑21 (MQ=255) gCTTTTTTATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttacta > 1:401566‑M1/1‑15 (MQ=255) tttttATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtt < 1:654783‑M1/77‑66 (MQ=255) tttttATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtt > 2:654783‑M1/1‑12 (MQ=255) ttttATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttactataaa < 2:1757189‑M1/136‑126 (MQ=255) tATTGCCGggcgactttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttacgataaaaga > 1:2444266‑M1/1‑8 (MQ=255) tATTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttactataaaaga < 1:817252‑M1/136‑129 (MQ=255) aTTGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccgggatgagctataaacatcttactataaaaga > 1:1727334‑M1/1‑7 (MQ=255) ttGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttactataaaagaac < 2:392686‑M1/136‑131 (MQ=255) ttGCCGggcgaatttacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttactataaaagaac < 1:1708975‑M1/136‑131 (MQ=255) ttGCCGggcgaatctacaattgaaatgcaacacaaagtaaaaaaataaacccataccgggtagaatatgtttaacgaccaaatcaaacaattcgaggtatccggtatgagctataaacatcttactataaaagaac < 1:782380‑M1/136‑131 (MQ=255) | CCATAATGCAGCTAATAATCACTTTCATTCATAGACTCCCCCAAGTCTGATGAATGGGGTTCATCAAAGCCCCCACTTTGATGTTTCCTACTCCTTGACCACTACATCCGCTGATGTGGTGGCTTTTTTATTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_14/90898‑91033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |