New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? TrimmedAssembly_T66_contig_21 = 294090 (0.000)208 (0.600) 64/258 1.3 100% intergenic (‑1/–) rasttk_feature_annotation_tool=elepa@bvbrc/– hypothetical protein/–
?TrimmedAssembly_T66_contig_37 1 = 0 (0.000)intergenic (–/+9) –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 –/Mobile element protein

Only 100 of 208 total aligned reads displayed.

TATTTTCTGCATCATTCATTGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_21/29276‑29409
                                                                                                                                      |                                                                                                                                  
tATTTTCTGCATCATTCCATGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTag                                                                                                                                  <  1:1062866‑M1/136‑3 (MQ=255)
tATTTTCTGCATCATTCATTGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTag                                                                                                                                  <  1:344861‑M1/136‑3 (MQ=255)
tATTTTCTGCATCATTCATTGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTag                                                                                                                                  <  1:750727‑M1/136‑3 (MQ=255)
 aTTTTCTGCATCATTCATTGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTata                                                                                                                                 >  1:100214‑M1/1‑133 (MQ=255)
          atcatTCATTGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgttt                                                                                                                         <  1:1019034‑M1/135‑12 (MQ=255)
            cattcattGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaa                                                                                                                      >  2:1870191‑M1/1‑122 (MQ=255)
              ttcattGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaat                                                                                                                    <  1:208557‑M1/136‑17 (MQ=255)
              ttcattGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaat                                                                                                                    <  2:762169‑M1/136‑17 (MQ=255)
                 tttgGATTTTTAAGTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGTGTTTATTTTGGGTTCTCTTACTAAGCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctc                                                                                                                 <  2:869775‑M1/135‑20 (MQ=255)
                 attGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatc                                                                                                                   >  2:1063143‑M1/1‑117 (MQ=255)
                 attGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatc                                                                                                                   >  2:239964‑M1/1‑117 (MQ=255)
                      atttttaatttttaAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttga                                                                                                             >  1:984208‑M1/1‑112 (MQ=255)
                      atttttaatttttaAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttga                                                                                                             >  2:1907000‑M1/1‑112 (MQ=255)
                      atttttaatttttaAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttga                                                                                                             >  2:1811354‑M1/1‑112 (MQ=255)
                      atttttaatttttaAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttga                                                                                                             >  2:1423030‑M1/1‑112 (MQ=255)
                      atttttaatttttaAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttga                                                                                                             >  1:2036487‑M1/1‑112 (MQ=255)
                      atttttaatttttaAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAAACATTTCAATCTCTAATTTTTTCTTTTTTTTTagaaaatgttttaaatctcttga                                                                                                             >  1:997321‑M1/1‑112 (MQ=255)
                       tttttaatttttaaATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgag                                                                                                            <  1:1160750‑M1/135‑25 (MQ=255)
                       tttttaatttttaaATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgag                                                                                                            <  2:1779381‑M1/135‑25 (MQ=255)
                                    aaTCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaa                                                                                              <  1:1597116‑M1/136‑39 (MQ=255)
                                              aTCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaat                                                                                    <  1:1466928‑M1/136‑49 (MQ=255)
                                              aTCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaat                                                                                    <  1:1423030‑M1/136‑49 (MQ=255)
                                              aTCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTATTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaat                                                                                    <  1:1143448‑M1/136‑49 (MQ=255)
                                                  ttAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgacc                                                                                >  2:2434158‑M1/1‑84 (MQ=255)
                                                      cAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccattt                                                                            <  1:151009‑M1/136‑57 (MQ=255)
                                                       aaaGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttg                                                                           >  1:176392‑M1/1‑79 (MQ=255)
                                                       aaaGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttg                                                                           >  2:2298479‑M1/1‑79 (MQ=255)
                                                       aaaGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttg                                                                           >  1:807913‑M1/1‑79 (MQ=255)
                                                       aaaGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaa                                                                                     <  2:1797349‑M1/125‑48 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTACTCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  1:45070‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  1:870925‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  2:984208‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  2:144287‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  1:1202869‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  2:1379302‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  2:1335938‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  1:132768‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  1:2047863‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  1:1800946‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  1:2298479‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTACAATCTCTAATTGGTACTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  2:2362649‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATATCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  1:1372248‑M1/136‑60 (MQ=255)
                                                         aGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTATTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  2:2079374‑M1/136‑60 (MQ=255)
                                                            cTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  1:1821532‑M1/134‑60 (MQ=255)
                                                            cTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacg                                                                        >  1:1246571‑M1/1‑74 (MQ=255)
                                                            cTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCGTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  2:706114‑M1/134‑60 (MQ=255)
                                                              ttGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgacta                                                                    <  2:2146125‑M1/136‑65 (MQ=255)
                                                                  gTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgt                                                                >  2:2275924‑M1/1‑68 (MQ=255)
                                                                      aTTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaag                                                            >  2:910888‑M1/1‑64 (MQ=255)
                                                                        tttGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaattaccatttgacgactagtgttaagtt                                                          >  1:2303769‑M1/1‑62 (MQ=255)
                                                                        tttGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagtt                                                          >  2:2260205‑M1/1‑62 (MQ=255)
                                                                        tttGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagtt                                                          >  2:615836‑M1/1‑62 (MQ=255)
                                                                              ttCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgttt                                                                                                                         >  2:444088‑M1/1‑56 (MQ=255)
                                                                               tctcTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaa                                                                                      >  1:1651433‑M1/1‑55 (MQ=255)
                                                                               tctcTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaa                                                                                      <  2:1651433‑M1/101‑47 (MQ=255)
                                                                                   ttACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaa                                               >  1:1885157‑M1/1‑51 (MQ=255)
                                                                                         aTCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaattttt                                          >  2:1609861‑M1/1‑45 (MQ=255)
                                                                                            tcttctTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccag                                      <  1:2260205‑M1/136‑95 (MQ=255)
                                                                                              ttcttTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagag                                    >  2:1846285‑M1/1‑40 (MQ=255)
                                                                                              ttcttTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagag                                    >  2:1384548‑M1/1‑40 (MQ=255)
                                                                                              ttcttTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagag                                    >  1:940457‑M1/1‑40 (MQ=255)
                                                                                               tcttTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagaga                                   <  1:591700‑M1/136‑98 (MQ=255)
                                                                                                cttTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagac                                  >  2:1075211‑M1/1‑38 (MQ=255)
                                                                                                cttTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagac                                  >  1:2362626‑M1/1‑38 (MQ=255)
                                                                                                cttTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagaga                                   >  1:2238717‑M1/1‑38 (MQ=255)
                                                                                                  ttAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacg                                 >  1:687444‑M1/1‑36 (MQ=255)
                                                                                                   tAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccatagacggc                               >  2:1167628‑M1/1‑35 (MQ=255)
                                                                                                   tAACCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggc                               <  2:1286849‑M1/136‑102 (MQ=255)
                                                                                                    aaCCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcg                              <  1:2283295‑M1/136‑103 (MQ=255)
                                                                                                    aaCCATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcg                              <  1:1923806‑M1/136‑103 (MQ=255)
                                                                                                      ccATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgac                            >  2:193046‑M1/1‑32 (MQ=255)
                                                                                                      ccATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgac                            >  1:836737‑M1/1‑32 (MQ=255)
                                                                                                      ccATTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgacta                                                                    >  1:2431169‑M1/1‑32 (MQ=255)
                                                                                                        aTTTCAATCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacat                          >  2:2328335‑M1/1‑30 (MQ=255)
                                                                                                             aaTCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatc                     <  2:301346‑M1/136‑112 (MQ=255)
                                                                                                             aaTCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacattta                       >  2:361449‑M1/1‑25 (MQ=255)
                                                                                                             aaTCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacattta                       >  2:651247‑M1/1‑25 (MQ=255)
                                                                                                             aaTCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacattta                       >  1:1663464‑M1/1‑25 (MQ=255)
                                                                                                             aaTCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacattta                       >  2:977953‑M1/1‑25 (MQ=255)
                                                                                                             aaTCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacattta                       >  2:181459‑M1/1‑25 (MQ=255)
                                                                                                             aaTCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacattta                       >  1:101763‑M1/1‑25 (MQ=255)
                                                                                                             aaTCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacattta                       >  2:1705203‑M1/1‑25 (MQ=255)
                                                                                                             aaTCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttacagagacggcgacattta                       >  2:376289‑M1/1‑25 (MQ=255)
                                                                                                             aaTCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaaatctaaaaaagctaaaatgaccatttgacgactagtgttaagatgacgttaacaatttttccagagactgcgacattta                       >  2:2326463‑M1/1‑25 (MQ=255)
                                                                                                             aaTCTCTAATTGGTTATTTGTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacggtcacaatttttccagagacggcgacattta                       >  2:537219‑M1/1‑25 (MQ=255)
                                                                                                              aTCTCTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatct                    <  1:361449‑M1/136‑113 (MQ=255)
                                                                                                               tctcTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatcta                   <  2:1669481‑M1/136‑114 (MQ=255)
                                                                                                               tctcTAATTGGTTCTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatcta                   <  1:977821‑M1/136‑114 (MQ=255)
                                                                                                                            cTTTTTTTTTagaacctgtttaaaatctcttgtgcagcaatactaaaaaagcaaaaatgaccatttgaccactagtgttaagttgaagttaacaatttttacagatacggcgacatttatagaaccaacagaaaga      >  2:743241‑M1/1‑10 (MQ=255)
                                                                                                                            cTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatctaaccaactgaaaga      <  1:413975‑M1/136‑127 (MQ=255)
                                                                                                                            cTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatctaaccaactgaaaga      <  2:1249049‑M1/136‑127 (MQ=255)
                                                                                                                            cTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatctaaccaactgaaaga      <  2:1663464‑M1/136‑127 (MQ=255)
                                                                                                                            cTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         >  2:267179‑M1/1‑10 (MQ=255)
                                                                                                                            cTTTTTTTTTagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgac                                                                         <  1:267179‑M1/69‑60 (MQ=255)
                                                                                                                            cTTTATATTTagaaccagtttaaaatctcttgagcagcaatactcaaaaagctaaactgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatctaaccaactgaaaga      <  2:976193‑M1/136‑127 (MQ=255)
                                                                                                                               ttttttttagaccctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatctaaccaactgaaagatc    >  1:232985‑M1/1‑8 (MQ=255)
                                                                                                                               ttttttttagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatctaaccaactgaaagatc    >  1:893525‑M1/1‑8 (MQ=255)
                                                                                                                               ttttttttagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatctaaccaactgaaagatc    >  1:1790637‑M1/1‑8 (MQ=255)
                                                                                                                                 ttttttagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatctaaccaactgaaagatcgt  >  2:2358324‑M1/1‑6 (MQ=255)
                                                                                                                                 ttttttagaacctgtttaaaatctcttgagcagcaatactaaaaaagctaaaatgaccatttgacgactagtgttaagttgacgttcacaatttttccagagacggcgacatttatctaaccaactgaaagatcgt  <  2:2036487‑M1/136‑131 (MQ=255)
                                                                                                                                      |                                                                                                                                  
TATTTTCTGCATCATTCATTGGATTTTTAATTTTTAAATCTGAATTATCTTTAACAAAGTCTTTGAGTTTATTTTGGGTTCTCTTACTAATCTCTTCTTTAACCATTTCAATCTCTAATTGGTTCTTTTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_21/29276‑29409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.