New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? TrimmedAssembly_T66_contig_25 = 55440 (0.000)109 (0.250)
+GGTAGCGTCAAGAATCTTGTGTAAATGAAATGCCTTCGTATATATAATATGTATCTAACT
34/138 0.5 100% intergenic (+242/–) rasttk_feature_annotation_tool=elepa@bvbrc/– hypothetical protein/–
?TrimmedAssembly_T66_contig_36 = 864 0 (0.000)intergenic (+2/–) rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– Transposase/–

Only 100 of 193 total aligned reads displayed.

AAAATCTTAATTATGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_25/5409‑5544
                                                                                                                                       |                                                                                                                                     
aaaaTCTTAATTATGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTCATATGAACAGATATTTTGTATATTATTACGTTTTTAACAGTc                                                                                                                                       >  1:2002214/1‑136 (MQ=255)
aaaaTCTTAATTATGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATc                                                                                                                                       >  2:1616926/1‑136 (MQ=255)
aaaaTCTTAATTATGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATc                                                                                                                                       >  2:1869300/1‑136 (MQ=255)
aaaaTCTTAATTATGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATc                                                                                                                                       >  2:1995303/1‑136 (MQ=255)
aaaaTCTTAATTATGAAAGTCTCTTTGAAACATAAGATAAAAATAAGTAGCAACAAAAAAGAGCCAAGTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATc                                                                                                                                       >  1:1399823/1‑136 (MQ=255)
  aaTCTTAATTATGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCgg                                                                                                                                     <  1:939226‑M1/136‑3 (MQ=255)
     cTTAATTATGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCATGTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggta                                                                                                                                   >  2:2071320‑M1/1‑131 (MQ=255)
        aaTTATGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgt                                                                                                                               <  2:503076‑M1/136‑9 (MQ=255)
          ttATGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTTCGTTATTAACAATCggtagcgtca                                                                                                                             >  1:2342148‑M1/1‑126 (MQ=255)
          ttATGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtca                                                                                                                             >  1:402685‑M1/1‑126 (MQ=255)
             tGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCACCAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaaga                                                                                                                          <  2:599067‑M1/136‑14 (MQ=255)
                    ctctTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgt                                                                                                                   <  1:2074653‑M1/136‑21 (MQ=255)
                    ctctTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgt                                                                                                                   <  2:441618‑M1/136‑21 (MQ=255)
                        ttGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaa                                                                                                               >  1:1921998‑M1/1‑112 (MQ=255)
                          gAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaat                                                                                                             <  2:814789‑M1/136‑27 (MQ=255)
                            aaCATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatg                                                                                                            <  1:45809‑M1/135‑28 (MQ=255)
                               aTTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaat                                                                                                        <  1:1504739‑M1/136‑32 (MQ=255)
                               aTTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaat                                                                                                        <  1:1869300‑M1/136‑32 (MQ=255)
                               aTTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaat                                                                                                        <  1:1639667‑M1/136‑32 (MQ=255)
                                 tAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgc                                                                                                      <  2:211363‑M1/136‑34 (MQ=255)
                                  aGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgcc                                                                                                     <  2:639421‑M1/136‑35 (MQ=255)
                                  aGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgcc                                                                                                     <  2:1110341‑M1/136‑35 (MQ=255)
                                    aaaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtcgcgtcaagtatcttgtgtaaatgaaatgcct                                                                                                    >  1:2451639‑M1/1‑100 (MQ=255)
                                    aaaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgtaatgcct                                                                                                    >  2:2165456‑M1/1‑100 (MQ=255)
                                    aaaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgcct                                                                                                    >  2:1200034‑M1/1‑100 (MQ=255)
                                    aaaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaat                                                                                                             >  1:578406‑M1/1‑100 (MQ=255)
                                    aaaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaat                                                                                                             <  2:578406‑M1/126‑27 (MQ=255)
                                    aaaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCg                                                                                                                                      >  1:2088810‑M1/1‑100 (MQ=255)
                                     aaaaaCTAAGTAGCAACAAAAAAGAGCCATTTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCgttagcgtcaagaatcttgtgtaaatgaaatgccttc                                                                                                  <  2:930783‑M1/136‑38 (MQ=255)
                                     aaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttc                                                                                                  <  2:103524‑M1/136‑38 (MQ=255)
                                     aaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttc                                                                                                  <  1:1215153‑M1/136‑38 (MQ=255)
                                     aaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgcctt                                                                                                   <  2:1636449‑M1/135‑37 (MQ=255)
                                     aaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgcctt                                                                                                   <  1:1632761‑M1/135‑37 (MQ=255)
                                     aaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgcctt                                                                                                   <  2:1823164‑M1/135‑37 (MQ=255)
                                     aaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgcct                                                                                                    <  1:288386‑M1/134‑36 (MQ=255)
                                     aaaaaCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGATTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgcctt                                                                                                   <  1:1237703‑M1/135‑37 (MQ=255)
                                         aCTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtat                                                                                              <  2:460913‑M1/136‑42 (MQ=255)
                                            aaGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatata                                                                                           >  1:2148364‑M1/1‑92 (MQ=255)
                                            aaGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGAAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatata                                                                                           >  1:1763996‑M1/1‑92 (MQ=255)
                                                     caaAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgta                                                                                  >  2:2433306‑M1/1‑83 (MQ=255)
                                                     caaAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggt                                                                                                                                    >  2:1229892‑M1/1‑83 (MQ=255)
                                                             agCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaat                                                                                                             <  2:926369‑M1/101‑27 (MQ=255)
                                                                  aTTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaata                                                                     >  1:1557971‑M1/1‑70 (MQ=255)
                                                                  aTTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaata                                                                     >  1:779718‑M1/1‑70 (MQ=255)
                                                                  aTTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatg                                                                                                            <  2:1587888‑M1/97‑28 (MQ=255)
                                                                  aTTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatg                                                                                                            >  1:1587888‑M1/1‑70 (MQ=255)
                                                                    ttGGCTCTTTTTTGTTGGCTTCAGTAATATGATCATATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaattgccttcgtatatatactatgtatctaacttaaataaa                                                                   <  1:1535511‑M1/136‑69 (MQ=255)
                                                                    ttGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaa                                                                   <  1:1946099‑M1/136‑69 (MQ=255)
                                                                    ttGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaa                                                                   <  2:551688‑M1/136‑69 (MQ=255)
                                                                    ttGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaa                                                                   <  1:917552‑M1/136‑69 (MQ=255)
                                                                    ttGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaa                                                                   <  2:752488‑M1/136‑69 (MQ=255)
                                                                    ttGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaa                                                                   <  2:1753635‑M1/136‑69 (MQ=255)
                                                                    ttGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaa                                                                   <  1:2120332‑M1/136‑69 (MQ=255)
                                                                    ttGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaa                                                                   <  1:1081764‑M1/136‑69 (MQ=255)
                                                                    ttGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaa                                                                   <  2:402685‑M1/136‑69 (MQ=255)
                                                                            tttttGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgctt                                                           <  1:1492423‑M1/136‑77 (MQ=255)
                                                                              tttGTTGGCTTCAGTAATCTGCACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttcc                                                         <  2:171061‑M1/136‑79 (MQ=255)
                                                                              tttGTTGGCTTCAGTAATATGAACAGATATTTTGTATTTTATTACGTTATTAACAATCgctagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatattatatgtttctaacttaaataaatgatgcttcc                                                         <  2:360561‑M1/136‑79 (MQ=255)
                                                                              tttGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttcc                                                         >  1:2034331‑M1/1‑58 (MQ=255)
                                                                              tttGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttcc                                                         <  2:236736‑M1/136‑79 (MQ=255)
                                                                                 gttgGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaag                                                      <  1:1616926‑M1/136‑82 (MQ=255)
                                                                                     gCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtg                                                   >  2:665966‑M1/1‑51 (MQ=255)
                                                                                        tCAGTAATATGAACCGATATTTAGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtacatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcct                                               <  2:505041‑M1/136‑89 (MQ=255)
                                                                                        tCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcttatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcct                                               <  1:2165456‑M1/136‑89 (MQ=255)
                                                                                        tCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttatataaatgatgcttccaaggtgtcct                                               <  2:1399823‑M1/136‑89 (MQ=255)
                                                                                        tCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcct                                               <  2:28323‑M1/136‑89 (MQ=255)
                                                                                        tCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcct                                               <  1:1173411‑M1/136‑89 (MQ=255)
                                                                                        tCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcct                                               <  2:2206506‑M1/136‑89 (MQ=255)
                                                                                         cAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctg                                              <  2:1287753‑M1/136‑90 (MQ=255)
                                                                                             aaTATGAACAGATATATTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctgg                                             <  2:905783‑M1/133‑91 (MQ=255)
                                                                                               tatGAACAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcc                                        <  2:2257009‑M1/136‑96 (MQ=255)
                                                                                                atGAACAGATAATGTGTATAATATTACGTTATTAACACTCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatagataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcct                                       <  2:2002214‑M1/136‑97 (MQ=255)
                                                                                                    aCAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttga                                   >  2:1507318‑M1/1‑36 (MQ=255)
                                                                                                    aCAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttga                                   >  2:1041602‑M1/1‑36 (MQ=255)
                                                                                                    aCAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttga                                   <  1:688838‑M1/136‑101 (MQ=255)
                                                                                                    aCAGATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcatttga                                   >  1:432997‑M1/1‑36 (MQ=255)
                                                                                                       gATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaattcctacgtatatataatatgtatctaacttaaataaatgatgcttccaagttgtcctggagtcctttgaac                                 >  1:2382507‑M1/1‑33 (MQ=255)
                                                                                                       gATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaac                                 >  1:2135315‑M1/1‑33 (MQ=255)
                                                                                                       gATATTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcct                                               <  1:1043695‑M1/121‑89 (MQ=255)
                                                                                                         tatTTTGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttagtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaacc                                <  2:1215019‑M1/134‑104 (MQ=255)
                                                                                                           ttttttATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtataaataatatgaatctaacttaaataaatgatgctaccaaggagtcctggagtcctttgaaccctcg                            >  1:1453633‑M1/1‑29 (MQ=255)
                                                                                                           ttttGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcg                            >  1:2236720‑M1/1‑29 (MQ=255)
                                                                                                           ttttGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcg                            >  1:2292516‑M1/1‑29 (MQ=255)
                                                                                                           ttttGTATATTATTACGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcg                            >  2:1067369‑M1/1‑29 (MQ=255)
                                                                                                           ttttGTATATTATTACGATATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgaatctaacttaaataaatgatgcttccaaggtgtcctggagtccaatgaacactcg                            >  1:80307‑M1/1‑29 (MQ=255)
                                                                                                              tGTATATTATTACGTTATTAACACTCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcggtg                         <  2:1520754‑M1/136‑111 (MQ=255)
                                                                                                                     tattaCGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcggtggatcc                    >  1:585271‑M1/1‑19 (MQ=255)
                                                                                                                     tattaCGTTATTAACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgaatctaacttaaataaattatgcttcaaaggtgtcctggagtcctttgaaccctcggtggatcc                    >  1:833907‑M1/1‑19 (MQ=255)
                                                                                                                             tattaACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcggtggatccgcttcagag           >  1:2225834‑M1/1‑11 (MQ=255)
                                                                                                                             tattaACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcggtggatccgcttcagag           >  1:2312703‑M1/1‑11 (MQ=255)
                                                                                                                             tattaACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcggtggatccgcttcagag           >  2:669485‑M1/1‑11 (MQ=255)
                                                                                                                             tattaACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcggtggatccgcttcagag           >  1:1328280‑M1/1‑11 (MQ=255)
                                                                                                                               ttaACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcct                                               >  1:1811496‑M1/1‑9 (MQ=255)
                                                                                                                               ttaACAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcct                                               <  2:1811496‑M1/97‑89 (MQ=255)
                                                                                                                                 aaCAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcggtggatccgcttcagagact        >  2:1973757‑M1/1‑7 (MQ=255)
                                                                                                                                 aaCAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttcc                                                         >  1:1212666‑M1/1‑7 (MQ=255)
                                                                                                                                 aaCAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttcc                                                         <  2:1212666‑M1/85‑79 (MQ=255)
                                                                                                                                  aCAATCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcggtggatccgcttcagagacttc      >  1:518454‑M1/1‑6 (MQ=255)
                                                                                                                                     aTCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatctaatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcggtggatccgcttcagagacttctcgt  <  2:288793‑M1/136‑134 (MQ=255)
                                                                                                                                     aTCggtagcgtcaagaatcttgtgtaaatgaaatgccttcgtatatataatatgtatctaacttaaataaatgatgcttccaaggtgtcctggagtcctttgaaccctcggtggatccgcttcagagacttctcgt  <  1:638381‑M1/136‑134 (MQ=255)
                                                                                                                                       |                                                                                                                                     
AAAATCTTAATTATGAAAGTCTCTTTGAAACATTAGAAAAAACTAAGTAGCAACAAAAAAGAGCCAATTTGGCTCTTTTTTGTTGGCTTCAGTAATATGAACAGATATTTTGTATATTATTACGTTATTAACAATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_25/5409‑5544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.