| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | TrimmedAssembly_T66_contig_1 | 88,572 | T→C | K89E (AAA→GAA) | rasttk_feature_annotation_tool=elepa@bvbrc ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | TrimmedAssembly_T66_contig_1 | 88,572 | 0 | T | C | 89.6% | 4608.7 / inf | 1407 | K89E (AAA→GAA) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (53/93); new base C (634/625); total (688/719) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.57e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1412 total aligned reads displayed.
TTCGTCCAAATCTTGCTTTTGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTA > TrimmedAssembly_T66_contig_1/88437‑88707 | aTCTTGCTTTTGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCtt < 2:1848773/136‑1 (MQ=255) cTTGCTTTTGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCtttt > 1:271186/1‑136 (MQ=255) ttGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCAtt < 1:1165407/136‑1 (MQ=255) tGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCAttt < 2:442410/136‑1 (MQ=255) tAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTacac < 1:103834/135‑1 (MQ=255) aGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACaa > 2:489923/1‑136 (MQ=255) gCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGat > 1:1711471/1‑136 (MQ=255) cAGCGATAATTTCTGTGGTAAGTTCATTCATTGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTACCTATTTCTATACAATTCAGAAATCTTTTATGAATTTACAAAAGata > 2:2375025/1‑136 (MQ=255) gATATTTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt < 1:1826664/136‑1 (MQ=255) gATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt < 2:418375/136‑1 (MQ=255) gATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt < 1:808973/136‑1 (MQ=255) gATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt < 2:2317670/136‑1 (MQ=255) gATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt < 2:1044519/136‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTAc < 2:703023/136‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCtt > 1:1920044/1‑110 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc > 1:2204626/1‑136 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc > 1:371375/1‑136 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc > 1:1550327/1‑136 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc > 1:982525/1‑136 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATGTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc > 1:2332090/1‑136 (MQ=255) tAAATTCTGTGGTAAGTTCATTCATTGTGAAAGCCTCCTGTGATGTATTCTGTGGTTACAAAATATCATAAGGGAAGGCATTCCCTATATCTATACAATTCAGAAATATTATATTCATTTACACAAGATATATTAc > 2:1120197/1‑136 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGctc > 2:1279699/1‑135 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTacac < 1:1374031/119‑1 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt > 2:2445190/1‑129 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGctc > 2:1699511/1‑135 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGctc > 2:2412362/1‑135 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGctc > 1:310482/1‑135 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGctc > 1:125428/1‑135 (MQ=255) ggTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaact > 2:1885935‑M1/1‑132 (MQ=255) ggTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCggg > 1:66368‑M1/1‑133 (MQ=255) aGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgt > 2:960085‑M1/1‑128 (MQ=255) tcattcatGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGAt < 2:919105/136‑1 (MQ=255) tcattcatGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttcta > 1:86102‑M1/1‑125 (MQ=255) tcattcatGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttcta > 1:335448‑M1/1‑125 (MQ=255) tcattcatGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagt > 2:748291‑M1/1‑126 (MQ=255) catTGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaat < 2:1610996‑M1/136‑17 (MQ=255) catGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAATATATTTTACGCTCTCtattacacacatgagg > 1:734535‑M1/1‑120 (MQ=255) catGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttg < 1:1069231‑M1/136‑17 (MQ=255) catGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaat > 1:780206‑M1/1‑120 (MQ=255) atGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatg < 1:2236052‑M1/136‑18 (MQ=255) tGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtatt > 1:1098062‑M1/1‑118 (MQ=255) ggAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCAttt < 2:310854/93‑1 (MQ=255) gAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaa > 1:2263858‑M1/1‑114 (MQ=255) aaTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatat > 2:1229071‑M1/1‑113 (MQ=255) aaTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGATCTCaacttttctatctaatgatagag > 2:2123949‑M1/1‑113 (MQ=255) cctcctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTacac > 2:609749/1‑91 (MQ=255) ctcctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTa < 1:528616/101‑1 (MQ=255) ctcctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcacgcttttt < 2:108510‑M1/136‑29 (MQ=255) cctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGa > 2:537222/1‑136 (MQ=255) cctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCtt < 2:2016074/74‑1 (MQ=255) tgtgATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaaga < 1:1429233‑M1/136‑33 (MQ=255) tgATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattg > 2:1408419‑M1/1‑102 (MQ=255) tgATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtaa > 2:1361939‑M1/1‑102 (MQ=255) ttttCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGt > 2:87381/1‑136 (MQ=255) tttCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtcatatttg < 2:226270‑M1/136‑41 (MQ=255) tttCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcatttttta < 1:91756‑M1/133‑38 (MQ=255) cTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttg < 2:269890‑M1/136‑43 (MQ=255) tgtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTacac > 2:115530/1‑74 (MQ=255) tgtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggggttcgggactgt < 1:1842198‑M1/136‑45 (MQ=255) tgtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatcttta > 1:2427206‑M1/1‑92 (MQ=255) tgtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaa > 2:1567477‑M1/1‑92 (MQ=255) gtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaa > 2:1658204‑M1/1‑91 (MQ=255) cTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttca > 1:195593‑M1/1‑84 (MQ=255) tAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtc < 2:1468940‑M1/136‑54 (MQ=255) aaaTATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTtgtg < 1:2101441/55‑1 (MQ=255) aaaTATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtc > 2:1192624‑M1/1‑82 (MQ=255) aaaTATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctataataggcgttattccaatcggttatttcattgg > 1:576508‑M1/1‑82 (MQ=255) aaaTATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactc > 1:1460704‑M1/1‑82 (MQ=255) cATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAg < 1:2455879/136‑1 (MQ=255) aaGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaacacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctatttt > 2:2181933‑M1/1‑73 (MQ=255) gggAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgaga > 1:1000244‑M1/1‑72 (MQ=255) ggAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctataataggcgttattccaatcggttatttcattggaatcacgagtta > 1:1137507‑M1/1‑70 (MQ=255) cATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtaatatttgttattattattaattatgctattttatttt < 2:2220523‑M1/134‑71 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttg < 1:1773903‑M1/79‑17 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccag > 1:945929‑M1/1‑63 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccag > 2:646366‑M1/1‑63 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctataataggcgttattccaatcggttatttcattggaatcacgagttagggggga > 1:1681320‑M1/1‑63 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaa > 2:1532388‑M1/1‑63 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaatta < 2:1780974‑M1/135‑73 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaatta < 1:426353‑M1/135‑73 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGC‑ATTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagccc > 2:1313855‑M1/1‑63 (MQ=255) aTTCCCTATTTCTATACAACTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAg < 2:1938988/123‑1 (MQ=255) tCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaatt < 1:2011754‑M1/136‑76 (MQ=255) cTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggggttcgggactgtacttagtcaggaaattagttggattttctccgtt > 1:489762‑M1/1‑58 (MQ=255) tATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaatta < 1:2137822‑M1/136‑79 (MQ=255) tttCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtaatatttgttattattattaattatgctattttatttttctatagacgg < 1:1603189‑M1/136‑82 (MQ=255) tCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtaatatttgttattattattaattatgctattttatttttctatagacggta < 2:1744695‑M1/136‑84 (MQ=255) cTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaatttcttattaa > 1:61200‑M1/1‑52 (MQ=255) tataCAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaatggaggtgtatg < 1:2047165‑M1/136‑86 (MQ=255) cAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtaatattttttattattattaattatgctattttatttttctatagacggtactgtca < 2:371214‑M1/136‑90 (MQ=255) cAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgccttttt < 1:150108‑M1/136‑90 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtaatatttgttattattattaattaggctattttatttttctatagacggtactgtcat > 1:1289499‑M1/1‑46 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaatta > 2:79852‑M1/1‑46 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctataataggcgttattccaatcggttatttcattggaatcacgagttaggggggagcgtcatgcggatacg > 1:2379460‑M1/1‑46 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctataataggcgttattccaatcggttatttcattggaa < 1:1576711‑M1/102‑57 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaatggaggtgtatgcgaca > 2:2064192‑M1/1‑46 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactc > 1:1205990‑M1/1‑47 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactc > 1:1329691‑M1/1‑47 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactc > 1:1642398‑M1/1‑47 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacg < 2:1813487‑M1/128‑82 (MQ=255) | TTCGTCCAAATCTTGCTTTTGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTA > TrimmedAssembly_T66_contig_1/88437‑88707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |