| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | TrimmedAssembly_T66_contig_1 | 88,584 | G→A | Q85* (CAA→TAA) | rasttk_feature_annotation_tool=elepa@bvbrc ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | TrimmedAssembly_T66_contig_1 | 88,584 | 0 | G | A | 91.0% | 5158.5 / inf | 1567 | Q85* (CAA→TAA) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (53/87); new base A (721/700); total (775/792) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.45e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 | |||||||||||
Only 100 of 1575 total aligned reads displayed.
GCTTTTGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTTG > TrimmedAssembly_T66_contig_1/88451‑88716 | gCTTTTGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTtatg < 2:1865486/136‑1 (MQ=255) ttGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCAtt > 1:1034959/1‑136 (MQ=255) ttGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCAtt > 1:918480/1‑136 (MQ=255) gggCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTa < 2:1329309/136‑1 (MQ=255) cAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGata > 2:1131167/1‑136 (MQ=255) gATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATAtttt < 1:1688201/136‑1 (MQ=255) gATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt < 1:1463393/136‑1 (MQ=255) gATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt < 1:1587731/136‑1 (MQ=255) taaagacTGAGGAAACTTCATTCATGGGGAATGCCTCCTGACATGTTTTCTGTGGTTACTAAATATCATAACGGAAGGCATTCCCAATTTCTATACACTTCAGAAATCTATTATGCATTTACACAAGATATTTTAc < 2:1054546/130‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGATTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTCGAAATCTTTTGTGCGTTTACACAAGATATTTTAc < 2:65493/136‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGACTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc > 2:317842/1‑136 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTGCTGTGATGTTTTCTGTGGTTACTAAATTTCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTAc < 2:171144/136‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTACATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc < 2:919388/136‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTAc < 2:703032/136‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTAc < 1:1644208/136‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTAc > 2:559045/1‑136 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTAc < 1:723480/136‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTa < 1:299232/135‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc > 1:371375/1‑136 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc > 2:1292260/1‑136 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc < 1:1140514/136‑1 (MQ=255) aTTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGc < 2:2069737/136‑1 (MQ=255) tttCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGct < 2:2242584/136‑1 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTtatg > 2:220965/1‑110 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt < 1:2445190/129‑1 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGctct < 1:13034/136‑1 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGctc > 1:203881/1‑135 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGctc > 1:1942091/1‑135 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCAGTTACACAAGATATTTTACGctc > 1:1504710/1‑135 (MQ=255) tgtgGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCt < 1:2287919‑M1/136‑2 (MQ=255) gtgGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCta < 1:1987047‑M1/136‑3 (MQ=255) ggTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtatt < 1:1834324‑M1/136‑5 (MQ=255) ggTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCggg > 1:66368‑M1/1‑133 (MQ=255) ggTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACAAAAGATATTTTACGCTCTCtgat > 1:1097162‑M1/1‑132 (MQ=255) aaGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttt > 2:271199‑M1/1‑129 (MQ=255) tcattcatGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtgg < 2:1890638‑M1/135‑11 (MQ=255) catGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttg < 1:2411614‑M1/136‑17 (MQ=255) gAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctat < 2:377123‑M1/135‑22 (MQ=255) aaTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaa > 1:1797322‑M1/1‑113 (MQ=255) aaTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaaca > 1:1341961‑M1/1‑113 (MQ=255) aaTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatata < 1:332090‑M1/135‑23 (MQ=255) cctcctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTacac < 1:609749/91‑1 (MQ=255) ctcctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaat > 2:1086850‑M1/1‑108 (MQ=255) tgtgATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggg < 1:125939‑M1/136‑33 (MQ=255) tgtgATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggg < 2:173716‑M1/136‑33 (MQ=255) tgtgATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaaga < 1:1429260‑M1/136‑33 (MQ=255) gtgATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcggggg > 2:1412994‑M1/1‑103 (MQ=255) gtgATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgta > 1:2211683‑M1/1‑103 (MQ=255) aTGTTTGCTGTGGTTACTAAATATCATAAGGTAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAAGCTCTCtaaaaaacatctagcattcaagctttttcatttttt > 1:1065080‑M1/1‑100 (MQ=255) tGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggggttcg < 1:1554528‑M1/136‑38 (MQ=255) ttttCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGt > 2:87381/1‑136 (MQ=255) ttttCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc < 1:1612346/91‑1 (MQ=255) ttttCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaa > 1:1732936‑M1/1‑97 (MQ=255) tttCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttat < 1:988880‑M1/136‑40 (MQ=255) cTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaa < 2:2365794‑M1/136‑44 (MQ=255) tgtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt > 1:262416/1‑84 (MQ=255) tgtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaa > 1:2175764‑M1/1‑92 (MQ=255) tgtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaa > 1:875076‑M1/1‑92 (MQ=255) aaaTATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactc > 2:748216‑M1/1‑82 (MQ=255) atatCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctataataggcgttattccaatcggttatttcattggaa < 1:947497‑M1/136‑57 (MQ=255) aTAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctataataggcgttattccaatcggttatttcattggaatc < 1:2357687‑M1/133‑59 (MQ=255) gggAAGGCCTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgaga > 1:2134610‑M1/1‑72 (MQ=255) gggAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgaga > 1:1000244‑M1/1‑72 (MQ=255) aaGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcagtcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataa > 2:1179479‑M1/1‑68 (MQ=255) aGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagatttt < 2:2011087‑M1/136‑69 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaa > 2:960313‑M1/1‑63 (MQ=255) cTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggggttcgggactgtacttagtcaggaaattagttggattttctccgtt > 1:489762‑M1/1‑58 (MQ=255) cTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttga < 1:428728‑M1/136‑79 (MQ=255) tATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaatttctt > 2:500871‑M1/1‑57 (MQ=255) tATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaatta < 1:1210977‑M1/136‑79 (MQ=255) aTTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaatttctta < 2:1670077‑M1/136‑81 (MQ=255) cTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctataataggcgttattccaatcggttatttcattggaatcacgagttaggggggagcgtcatgcgg > 2:2443521‑M1/1‑52 (MQ=255) ataCAATTCAGAAATATTTTATGCATTTACACAAGATATTTTAAGCTCTCaacttttctatctactgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaatggaggtgtatgc < 1:555017‑M1/136‑87 (MQ=255) aCAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaatttcttattaatacg > 1:2247648‑M1/1‑48 (MQ=255) cAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgccttttt < 2:1781094‑M1/136‑90 (MQ=255) aaTTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTTGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGAt > 1:2086140/1‑136 (MQ=255) aaTTCAGAAATCTTTTCTGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtaatatttgttattattattaattatgctattttatttttctatagacggtactgtcat < 2:1540068‑M1/136‑91 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggggttcgggactgtacttagtcaggaaattagttggattttctccgttcaggttggtgaa > 1:1384998‑M1/1‑46 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggggttcgggactgtacttagtcaggaaattagttggattttctccgttaaggttggtgaa > 1:1179409‑M1/1‑46 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgccttttta > 1:800015‑M1/1‑46 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtc < 2:1473948‑M1/99‑54 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaatta > 2:79852‑M1/1‑46 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaatggaggtgtatgcgaca > 2:428393‑M1/1‑46 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaatggaggtgtatgcgaca > 2:2407640‑M1/1‑46 (MQ=255) aGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGAtagtag > 2:1206821/1‑136 (MQ=255) aGAAATCTTTTGTGCGTTTACACAAAATATTTTACCCTCACCACAAAACGATAGGGTAACATACGCCACCATAGTGGCGTAGTCTTGTAGATAAAAACAAACGACAAAATCAAACATATAAAGAAAAATAtagtat > 2:2158347/1‑135 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggggttcgggactgtacttagtcaggaaattagttggattttctccgttaaggttggtgaattgtt > 1:1894432‑M1/1‑41 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaatttcttattaatacgttgaaag > 2:615939‑M1/1‑41 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaatttcttattaatacgttgaaag > 2:1369921‑M1/1‑41 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtaatatttgttattattattaattatgctattttatttttctatagacggtactgtcataaaat > 2:1825187‑M1/1‑41 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtaatatttgttattattattaattatgctattttatttttatatagacggttctgtcataaaat > 2:1951003‑M1/1‑41 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgcctttttaaccac > 2:2294435‑M1/1‑41 (MQ=255) aaTCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaactctttaatttcaacttcgcttaaattaacggctaatttcttattaatacgttgaaaga < 2:124815‑M1/134‑97 (MQ=255) aaTCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtaatatttgttattattattaattatgctattttatttttctatagacggtactgtcataaaat < 2:1579406‑M1/133‑96 (MQ=255) aaTCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaatggaggtgtatgcgacatgaaaa < 2:2115076‑M1/134‑97 (MQ=255) tCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgcctttttaaccacgctta < 1:520191‑M1/136‑101 (MQ=255) tCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgcctttttaaccacgctta < 1:823421‑M1/136‑101 (MQ=255) tCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacggat > 2:1618109‑M1/1‑37 (MQ=255) acatttatgCATTTACACAAGATATTTTACGATCTCtaaaaaacatctagcatacaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgcctttttaaccacgctta < 1:766217‑M1/133‑101 (MQ=255) tttATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaatggaggtgtatgcgacatgaaaaataagga > 2:45661‑M1/1‑33 (MQ=255) | GCTTTTGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTTG > TrimmedAssembly_T66_contig_1/88451‑88716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |