New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? TrimmedAssembly_T66_contig_15 = 906300 (0.000)156 (0.990)
+AGTTGCGTTGAGGTAATCAACGAACGAT
48/204 0.3 80.7% intergenic (+107/–) rasttk_feature_annotation_tool=elepa@bvbrc/– hypothetical protein/–
?TrimmedAssembly_T66_contig_17 66638 = 95 (0.560)intergenic (+352/–) rasttk_feature_annotation_tool=elepa@bvbrc/– hypothetical protein/–

Only 100 of 205 total aligned reads displayed.

GGCTTGCAATTTATCAGGATAATTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_15/90495‑90630
                                                                                                                                       |                                                                                                                                      
    tGCAATTTATCAGGATAATTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagtt                                                                                                                                    <  2:524115‑M1/136‑5 (MQ=255)
    tGCAATTTATCAGGATAATTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagtt                                                                                                                                    <  1:1699817‑M1/136‑5 (MQ=255)
    tGCAATTTATCAGGATAATTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagtt                                                                                                                                    <  1:2212433‑M1/136‑5 (MQ=255)
    tGCAATTTATCAGGATAATTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagtt                                                                                                                                    <  2:1599199‑M1/136‑5 (MQ=255)
        aTTTATCAGGATAATTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgt                                                                                                                                >  1:1804800‑M1/1‑128 (MQ=255)
        aTTTATCAGGATAATTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgt                                                                                                                                >  1:555671‑M1/1‑128 (MQ=255)
        aTTTATCAGGATAATTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgt                                                                                                                                >  1:2226903‑M1/1‑128 (MQ=255)
        aTTTATCAGGATAATTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgt                                                                                                                                >  1:1643570‑M1/1‑128 (MQ=255)
              cAGGATAATTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggt                                                                                                                          >  1:1272038‑M1/1‑122 (MQ=255)
                    aaTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatca                                                                                                                     >  1:354084‑M1/1‑116 (MQ=255)
                    aaTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatca                                                                                                                     >  2:408216‑M1/1‑116 (MQ=255)
                     aTTTGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTTATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  2:1547750‑M1/136‑22 (MQ=255)
                     aTTTGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTCGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  2:2422179‑M1/136‑22 (MQ=255)
                     aTTGGTATATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  1:846443‑M1/136‑22 (MQ=255)
                     aTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  1:446704‑M1/136‑22 (MQ=255)
                     aTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  1:2008362‑M1/136‑22 (MQ=255)
                     aTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  1:318773‑M1/136‑22 (MQ=255)
                     aTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  2:1325034‑M1/136‑22 (MQ=255)
                     aTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  1:2481444‑M1/136‑22 (MQ=255)
                     aTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  1:1762449‑M1/136‑22 (MQ=255)
                     aTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  1:1602580‑M1/136‑22 (MQ=255)
                     aTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  2:438617‑M1/136‑22 (MQ=255)
                     aTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  1:1409586‑M1/136‑22 (MQ=255)
                     aTTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaac                                                                                                                   <  1:1364467‑M1/136‑22 (MQ=255)
                              ttAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgattt                                                                                                          <  2:1001949‑M1/136‑31 (MQ=255)
                              ttAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgattt                                                                                                          <  2:457038‑M1/136‑31 (MQ=255)
                              ttAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgattt                                                                                                          >  1:2386906‑M1/1‑106 (MQ=255)
                                           ttgAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaa                                                                                              >  1:2183686‑M1/1‑93 (MQ=255)
                                             gAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAACTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaa                                                                                              >  2:797292‑M1/1‑91 (MQ=255)
                                              aGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAAGTTGATATGATGATTAagtggcgttgaggtaatcaacgaacgatttagacctttgaaaactg                                                                                          >  1:1868097‑M1/1‑90 (MQ=255)
                                              aGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaacactg                                                                                          >  2:911576‑M1/1‑90 (MQ=255)
                                              aGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactg                                                                                          >  2:1406225‑M1/1‑90 (MQ=255)
                                              aGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactg                                                                                          >  1:1018617‑M1/1‑90 (MQ=255)
                                               ggCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAAGTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactga                                                                                         >  2:1128640‑M1/1‑89 (MQ=255)
                                                 cgcACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaac                                                                                       >  1:2247889‑M1/1‑87 (MQ=255)
                                                 cgcACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactga                                                                                         <  2:1231744‑M1/134‑48 (MQ=255)
                                                   cacaAAGCGGTTAGCCGCTTGCTTCCCACGAAAATTAATTATAAAAAGTTGTTGACCAGGTGTGGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgtaaactgaacaa                                                                                     >  2:863391‑M1/1‑85 (MQ=255)
                                                   cacaAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaa                                                                                     >  1:625577‑M1/1‑85 (MQ=255)
                                                   cacaAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaa                                                                                     >  1:926019‑M1/1‑85 (MQ=255)
                                                   cacaAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaa                                                                                     >  1:1126018‑M1/1‑85 (MQ=255)
                                                   cacaAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgattt                                                                                                          <  2:66582‑M1/115‑31 (MQ=255)
                                                      aaaGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaactatttagacctttgaaaactgaacatagt                                                                                  >  2:821255‑M1/1‑82 (MQ=255)
                                                      aaaGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagt                                                                                  >  2:716099‑M1/1‑82 (MQ=255)
                                                      aaaGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagt                                                                                  >  1:1926478‑M1/1‑82 (MQ=255)
                                                      aaaGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagt                                                                                  >  2:269503‑M1/1‑82 (MQ=255)
                                                      aaaGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagt                                                                                  >  1:152726‑M1/1‑82 (MQ=255)
                                                      aaaGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagt                                                                                  >  1:339704‑M1/1‑82 (MQ=255)
                                                      aaaGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagt                                                                                  >  2:2049757‑M1/1‑82 (MQ=255)
                                                      aaaGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagt                                                                                  >  2:173713‑M1/1‑82 (MQ=255)
                                                      aaaGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGAGGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagt                                                                                  >  1:1615237‑M1/1‑82 (MQ=255)
                                                        aGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagttt                                                                                <  1:1472426‑M1/136‑57 (MQ=255)
                                                        aGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagttt                                                                                <  2:1622937‑M1/136‑57 (MQ=255)
                                                        aGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtt                                                                                 >  2:1475356‑M1/1‑80 (MQ=255)
                                                        aGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtt                                                                                 >  1:295428‑M1/1‑80 (MQ=255)
                                                        aGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtt                                                                                 >  1:1694529‑M1/1‑80 (MQ=255)
                                                        aGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtt                                                                                 >  2:1786217‑M1/1‑80 (MQ=255)
                                                        aGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtt                                                                                 >  1:680065‑M1/1‑80 (MQ=255)
                                                        aGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaa                                                                                                                    <  1:2405669‑M1/100‑21 (MQ=255)
                                                           ggTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcg                                                                              >  2:43139‑M1/1‑77 (MQ=255)
                                                           ggTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcg                                                                              >  1:834870‑M1/1‑77 (MQ=255)
                                                           ggTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcg                                                                              >  1:106315‑M1/1‑77 (MQ=255)
                                                             ttAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacg                                                                           >  2:126459‑M1/1‑75 (MQ=255)
                                                                gCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaa                                                                         >  2:1863617‑M1/1‑72 (MQ=255)
                                                                gCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaa                                                                         >  2:1246588‑M1/1‑72 (MQ=255)
                                                                gCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaa                                                                         >  2:1175640‑M1/1‑72 (MQ=255)
                                                                  cGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaat                                                                        <  2:2226903‑M1/134‑65 (MQ=255)
                                                                  cGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaat                                                                        <  2:2386902‑M1/134‑65 (MQ=255)
                                                                  cGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaat                                                                        <  2:1968632‑M1/134‑65 (MQ=255)
                                                                  cGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaat                                                                        <  2:30840‑M1/134‑65 (MQ=255)
                                                                  cGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaat                                                                        <  1:1011049‑M1/134‑65 (MQ=255)
                                                                  cGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaat                                                                        <  1:395110‑M1/134‑65 (MQ=255)
                                                                  cGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaat                                                                        <  1:43139‑M1/134‑65 (MQ=255)
                                                                  cGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaat                                                                        <  1:2255491‑M1/134‑65 (MQ=255)
                                                                  cGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaat                                                                        <  1:469238‑M1/134‑65 (MQ=255)
                                                                  cGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaat                                                                        <  2:1522889‑M1/134‑65 (MQ=255)
                                                                  cGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaat                                                                        <  1:2066060‑M1/134‑65 (MQ=255)
                                                                      tgcttCCAACGAAAATTAATTATAAAAAGTTGTTTACAAGATGATGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatg                                                                  <  1:2146679‑M1/136‑71 (MQ=255)
                                                                       gcttCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacagagtttcgacgaatcaaatgt                                                                 >  1:1917891‑M1/1‑65 (MQ=255)
                                                                               cGAAAATTAATCATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtc                                                         <  2:688159‑M1/136‑80 (MQ=255)
                                                                                 aaaaTTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtc                                                         >  2:428152‑M1/1‑55 (MQ=255)
                                                                                      taattaTAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgat                                                  >  2:1690907‑M1/1‑50 (MQ=255)
                                                                                      taattaTAAAAAGTTGTTGACAAGATGTTGATAACTTGATAGGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgat                                                  >  1:875553‑M1/1‑50 (MQ=255)
                                                                                           ataAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttga                                             <  1:2300594‑M1/136‑92 (MQ=255)
                                                                                           ataAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttga                                             <  1:795270‑M1/136‑92 (MQ=255)
                                                                                                              aTGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacattt                           >  2:656043‑M1/1‑26 (MQ=255)
                                                                                                               tGTTGATACCTTGTTATTATGATTAagttgcgttgaggtaatcaacgaacgatttatacctttgaaaactgaacaaattttcgtctaatcaaatgtgttgggtctcttgattttgaatctagagcaaaaaatttg                          <  2:1881554‑M1/135‑111 (MQ=255)
                                                                                                               tGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacatttg                          <  1:582239‑M1/135‑111 (MQ=255)
                                                                                                               tGTTGATAACTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacattt                           <  2:1608626‑M1/134‑110 (MQ=255)
                                                                                                                       aCTTGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacatgtgcgaagtcaa                 >  2:892029‑M1/1‑17 (MQ=255)
                                                                                                                          tGATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacatttgcgaagtcaattc              >  2:1846748‑M1/1‑14 (MQ=255)
                                                                                                                           gATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacatttgcgaagtcaattc              >  2:639450‑M1/1‑13 (MQ=255)
                                                                                                                           gATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacatttgcgaagtcaattc              >  2:1399385‑M1/1‑13 (MQ=255)
                                                                                                                           gATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacatttgcgaagtcaattc              >  2:209075‑M1/1‑13 (MQ=255)
                                                                                                                           gATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacat                             <  1:2006608‑M1/120‑108 (MQ=255)
                                                                                                                           gATATGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacat                             >  2:2006608‑M1/1‑13 (MQ=255)
                                                                                                                            atatGATGATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacatttgcgaagtcaattc              >  2:2314358‑M1/1‑12 (MQ=255)
                                                                                                                              atgatgATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagttt                                                                                >  2:2368848‑M1/1‑10 (MQ=255)
                                                                                                                              atgatgATTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagttt                                                                                <  1:2368848‑M1/66‑57 (MQ=255)
                                                                                                                                  tgatTAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacatttgcgaagtcaattcgctagcaa      <  1:1177068‑M1/136‑131 (MQ=255)
                                                                                                                                      tAagttgcgttgaggtaatcaacgaacgatttagacctttgaaaactgaacaaagtttcgacgaatcaaatgtgtagggtctcttgattttgaatcaagagcaaaacatttgcgaagtcaattcgctagcaaataa  >  2:470275‑M1/1‑2 (MQ=255)
                                                                                                                                       |                                                                                                                                      
GGCTTGCAATTTATCAGGATAATTGGTAAATTAGTATACGTTGTTGAGGCGCACAAAGCGGTTAGCCGCTTGCTTCCAACGAAAATTAATTATAAAAAGTTGTTGACAAGATGTTGATAACTTGATATGATGATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  TrimmedAssembly_T66_contig_15/90495‑90630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.