| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_31 | 1 = | 0 (0.000) | 188 (0.640) | 63/260 | 0.2 | 100% | intergenic (–/+71) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_34 | 1 = | 0 (0.000) | intergenic (–/‑119) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
Only 100 of 188 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGTGAAATTCCCC > TrimmedAssembly_T66_contig_31/1‑133 | taattcgggtcatgaagatacctctttcttgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCttt < 1:1869870‑M1/4‑1 (MQ=255)taattagtgtcatgaagatacctctttcttgtttttggttaattaagaataggtattcatggcctttttgaatagtctgaataaagaactggtctcgtagagcaggtgttgcacttcaattttaaatcgaggCttt < 2:1500517‑M1/4‑1 (MQ=255) aattcgggtcatgaagatacctctttcttgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCtttt < 1:1004959‑M1/5‑1 (MQ=255) aattcgggtcatgaagatacctctttcttgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCtttt < 1:630607‑M1/5‑1 (MQ=255) aattcgggtcatgaagatacctctttcttgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCtttt < 1:1264399‑M1/5‑1 (MQ=255) aattcgggtcatgaagatacctctttcttgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCtttt < 1:2025768‑M1/5‑1 (MQ=255) aattcgggtcatgaagatacctctttcttgtttgtggcgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCtttt < 1:688511‑M1/5‑1 (MQ=255) tcgggtcatgaagatacctctttcttgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAAt > 2:893922‑M1/129‑136 (MQ=255) gggtcatgaagattcctcgttcttgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaataactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAAttt > 2:1103608‑M1/127‑136 (MQ=255) tcatgaagatacatctttcttgtttgtggtgaattaagaataggtcttaatggcatttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatctaggCTTTTAAttttt < 2:447679‑M1/12‑1 (MQ=255) atgaagatacctctttcttgtttgtggtgaattatgaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCg > 2:1943012‑M1/122‑136 (MQ=255) atgaagatacctctttcttgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCg < 2:491413‑M1/15‑1 (MQ=255) aagatacctctttcttgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCa < 2:1299802‑M1/18‑1 (MQ=255) aagatacctctttcttgtatggggtgaattaagaataggtcttcatggccgttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTTATTTTTCCGTCa < 2:161310‑M1/18‑1 (MQ=255) ctctttcttgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGa < 2:2529491‑M1/25‑1 (MQ=255) tgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCttt < 1:803648‑M1/33‑1 (MQ=255) tgtttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCttt < 1:168418‑M1/33‑1 (MQ=255) ttgtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCtttttt < 2:339028‑M1/36‑1 (MQ=255) ttgtggtgaattaagaataggtcttcatggccattttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCtttttt > 2:194865‑M1/101‑136 (MQ=255) gtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCg < 2:1159476‑M1/15‑1 (MQ=255) gtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTg < 1:1159926‑M1/37‑1 (MQ=255) gtggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTg < 2:1845166‑M1/37‑1 (MQ=255) ggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCa < 2:2349546‑M1/40‑1 (MQ=255) ggtgaattaagaataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCa < 1:21408‑M1/40‑1 (MQ=255) ggtgaattaagaataggtcttcagggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCa < 1:282675‑M1/40‑1 (MQ=255) ataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGt > 1:1189867‑M1/85‑135 (MQ=255) ataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGt > 1:1619433‑M1/85‑135 (MQ=255) ataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGt > 1:297089‑M1/85‑135 (MQ=255) ataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGt > 2:2042843‑M1/85‑135 (MQ=255) ataggtcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGt > 1:28544‑M1/85‑135 (MQ=255) tcttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGAttt > 1:1957177‑M1/80‑135 (MQ=255) cttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTg > 1:707059‑M1/79‑135 (MQ=255) cttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGc > 2:60838‑M1/79‑136 (MQ=255) ttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGAttt > 1:220444‑M1/78‑133 (MQ=255) ttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGAttt < 2:220444‑M1/56‑1 (MQ=255) ttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCt < 2:265347‑M1/59‑1 (MQ=255) ttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCt < 1:1018724‑M1/59‑1 (MQ=255) ttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCt < 2:1990734‑M1/59‑1 (MQ=255) ttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCt < 2:222291‑M1/59‑1 (MQ=255) ttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCt < 1:403329‑M1/59‑1 (MQ=255) ttcatggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCATATTTGCCAAATACATTCGTGATTTGCt < 1:203685‑M1/59‑1 (MQ=255) catggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTAGTGATTTGCTTa > 1:1283003‑M1/76‑136 (MQ=255) ggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGACTCTCTGTTTTGCCAAATTCATTCGTGATTTGCTTAAAt < 2:1264203‑M1/64‑1 (MQ=255) ggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTaaa < 2:1797005‑M1/63‑1 (MQ=255) ggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTaaa < 1:1247494‑M1/63‑1 (MQ=255) ggcctttttgactagtctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCACTTATTTGCCAAATTCATTCGTGATTTGCTTaaa < 1:1587372‑M1/63‑1 (MQ=255) tctgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGATGAATCTCTATTTAGCCAAATTCATTCGTGATTTGCTTAAATCTTAGAATCACatta < 2:2113837‑M1/79‑2 (MQ=255) tgaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTc < 1:229963‑M1/81‑1 (MQ=255) tgaataaagaactcgtctagtagagcaggtgttgcacttcaatttaaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTATGTTTTGCCAAATTCATTCGAGATTTGCTTAAATATTATCTTCaaattgtc < 2:1147341‑M1/81‑4 (MQ=255) gaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCa < 2:67744‑M1/82‑1 (MQ=255) gaataaagaactggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCa < 2:1093643‑M1/82‑1 (MQ=255) cctggactagtagagcaggtgtagcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTATTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGc > 2:1264399‑M1/46‑135 (MQ=255) actggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTg > 2:2267124‑M1/46‑134 (MQ=255) actggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGc > 2:97413‑M1/46‑135 (MQ=255) actggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCa < 2:1539677‑M1/91‑1 (MQ=255) actggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCa < 1:936082‑M1/91‑1 (MQ=255) ctggtctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAg > 1:1324737‑M1/45‑136 (MQ=255) tctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAgttgt < 1:993831‑M1/96‑1 (MQ=255) tctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAgttgt < 1:2394828‑M1/96‑1 (MQ=255) ctagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAgttgtt > 1:1996179‑M1/40‑136 (MQ=255) tagtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAgttgtt < 1:962488‑M1/97‑1 (MQ=255) agtagagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAAGTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTcc > 1:2409060‑M1/38‑136 (MQ=255) gagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAAt < 2:782135‑M1/102‑1 (MQ=255) gagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAAt < 1:424957‑M1/102‑1 (MQ=255) gagcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGAAGTTGTTCAAAt < 2:1167280‑M1/102‑1 (MQ=255) gcaggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATcc > 2:871087‑M1/32‑135 (MQ=255) ggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGcc < 2:2458934‑M1/108‑1 (MQ=255) ggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGcc < 1:1888653‑M1/108‑1 (MQ=255) ggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGcc < 2:1587950‑M1/108‑1 (MQ=255) ggtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGcc < 1:465799‑M1/108‑1 (MQ=255) gtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGcc < 2:811771‑M1/108‑1 (MQ=255) gtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGcc < 1:1774379‑M1/108‑1 (MQ=255) gtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGcc < 1:1563932‑M1/108‑1 (MQ=255) gtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGcc < 2:1719408‑M1/108‑1 (MQ=255) gtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGcc < 1:977237‑M1/108‑1 (MQ=255) gtgttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGcc < 1:92970‑M1/108‑1 (MQ=255) ttgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGccacca < 1:729255‑M1/112‑1 (MQ=255) tgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGccacca < 2:2029168‑M1/112‑1 (MQ=255) tgcacttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGCGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGccacca < 2:393719‑M1/112‑1 (MQ=255) cttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCTCCAACgag < 2:1966053‑M1/117‑2 (MQ=255) cttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGAt < 1:1142959‑M1/117‑1 (MQ=255) cttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGAt < 2:2514287‑M1/117‑1 (MQ=255) cttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGAt < 1:1061222‑M1/117‑1 (MQ=255) cttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGAt < 1:226114‑M1/117‑1 (MQ=255) cttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGAt < 1:66434‑M1/117‑1 (MQ=255) cttcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATATCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGAt < 2:2471356‑M1/117‑1 (MQ=255) tcaattttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGt < 2:798962‑M1/119‑1 (MQ=255) attttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGt < 1:1537279‑M1/51‑1 (MQ=255) ttttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTATCATCACATTTTCAATTTTTTCAGTTGTTCAAATCAAGCCACCAAAGATGTTCGt < 2:2115841‑M1/123‑1 (MQ=255) ttttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGt < 1:1527513‑M1/123‑1 (MQ=255) ttttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGt < 1:1139335‑M1/123‑1 (MQ=255) ttttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGt < 2:1198351‑M1/123‑1 (MQ=255) ttttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGt < 2:1362703‑M1/123‑1 (MQ=255) ttttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGt < 2:1734919‑M1/123‑1 (MQ=255) ttttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGt < 2:2109784‑M1/123‑1 (MQ=255) ttttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGt < 1:2271797‑M1/123‑1 (MQ=255) ttttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGt < 1:216506‑M1/123‑1 (MQ=255) ttttaaatcgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGAGGTTCGt < 1:886442‑M1/123‑1 (MQ=255) cgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGTGAAATTcc > 1:2032230‑M1/6‑136 (MQ=255) cgaggCTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGTGAAATTc < 2:1004321‑M1/130‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTTTAATTTTTCCGTCATAGCTGAATCTCTTTTTTGCCAAATTCATTCGTGATTTGCTTAAATCTTAGCATCACATTTTCAATTTTTGCAGTTGTTCCAATCCCGCCACCAACGATGTTCGTGAAATTCCCC > TrimmedAssembly_T66_contig_31/1‑133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |