| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_40 | = 631 | 0 (0.000) | 241 (0.700) | 70/260 | 0.1 | 100% | coding (1/420 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_41 | = 437 | 0 (0.000) | coding (435/435 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
Only 100 of 248 total aligned reads displayed.
TTGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_40/497‑631 | ttGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTt < 2:1636071‑M1/136‑2 (MQ=255)ttGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTt < 2:1732771‑M1/136‑2 (MQ=255)ttGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTt < 2:1818735‑M1/136‑2 (MQ=255) gACCGAAGGCCCCCATAAACTTGCCAAAGGCGTTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgaa < 1:2062568‑M1/135‑6 (MQ=255) gAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaa < 1:1263218‑M1/136‑11 (MQ=255) gAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaa < 1:254618‑M1/136‑11 (MQ=255) gAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaa < 1:2011839‑M1/136‑11 (MQ=255) cccccATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagc < 1:2351423‑M1/134‑14 (MQ=255) cccATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccg < 2:888276‑M1/136‑18 (MQ=255) aTAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgta > 1:1654226‑M1/1‑116 (MQ=255) gCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcc < 2:1210073‑M1/136‑29 (MQ=255) aaaGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaa > 1:1063436‑M1/1‑105 (MQ=255) aaaGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaa > 1:666768‑M1/1‑105 (MQ=255) aaaGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaa > 1:431303‑M1/1‑105 (MQ=255) aaaGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaa > 1:2466273‑M1/1‑105 (MQ=255) aaaGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaa > 2:443766‑M1/1‑105 (MQ=255) aaaGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaa > 1:1636995‑M1/1‑105 (MQ=255) aaaGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaa > 2:2433843‑M1/1‑105 (MQ=255) aaGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaat < 2:350596‑M1/136‑33 (MQ=255) ttAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaa > 2:874399‑M1/1‑94 (MQ=255) gCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaa < 1:764181‑M1/134‑46 (MQ=255) cTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgt > 1:242186‑M1/1‑87 (MQ=255) cTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccg < 2:2087529‑M1/135‑49 (MQ=255) cTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccg < 2:220295‑M1/135‑49 (MQ=255) aGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttga > 2:1493867‑M1/1‑84 (MQ=255) ccGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaatcacagtatctacttcccaatgaccaaaagctaaccgttgatt > 1:2324031‑M1/1‑82 (MQ=255) ccGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgatt > 2:1346288‑M1/1‑82 (MQ=255) ccGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgatt > 1:588082‑M1/1‑82 (MQ=255) ccGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgatt > 1:1284436‑M1/1‑82 (MQ=255) ccGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgatt > 1:79281‑M1/1‑82 (MQ=255) ccGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgatt > 1:29835‑M1/1‑82 (MQ=255) ccGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgatt > 1:260065‑M1/1‑82 (MQ=255) ccGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgatt > 1:1472846‑M1/1‑82 (MQ=255) ccGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgatt > 1:1574782‑M1/1‑82 (MQ=255) ccGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgatt > 2:1720418‑M1/1‑82 (MQ=255) ccGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgatt > 2:1840920‑M1/1‑82 (MQ=255) ccGATCTATTAGGGGCTTTGATAGCCCATAGAATTCGGGTCTTACGTTCTACGAATGTAACAAGACATGATCGTGACTCACTtcgactagaaagcacagtaactacttcccaatgaccaaaagctaaccgatgatt > 2:1441215‑M1/1‑82 (MQ=255) cGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgat < 2:126835‑M1/134‑54 (MQ=255) cGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgat < 1:2157447‑M1/134‑54 (MQ=255) cGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgat < 1:1148862‑M1/134‑54 (MQ=255) cGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgat < 1:894399‑M1/134‑54 (MQ=255) aTTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagtt > 2:1277863‑M1/1‑75 (MQ=255) aTTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagtt > 2:754024‑M1/1‑75 (MQ=255) aTTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagtt < 2:2419698‑M1/136‑62 (MQ=255) aTTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagtt > 2:168701‑M1/1‑75 (MQ=255) aTTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagtt > 1:1867511‑M1/1‑75 (MQ=255) aTTAGGGGCTTTGATAGCCCATAGAAGTATGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaacctttgattaacagtt < 2:1068239‑M1/136‑62 (MQ=255) ggCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttgg < 2:1867511‑M1/135‑67 (MQ=255) tttGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgt > 2:1965173‑M1/1‑66 (MQ=255) ttGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgtt < 1:861479‑M1/136‑72 (MQ=255) gATATCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgacaaaaagctaaccgttgaaaaacagttgttggccgttgt > 2:1155246‑M1/1‑63 (MQ=255) gATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgt > 2:1461106‑M1/1‑63 (MQ=255) gATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgat < 1:18942‑M1/116‑54 (MQ=255) gATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgat > 2:18942‑M1/1‑63 (MQ=255) tAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttc > 2:2525217‑M1/1‑61 (MQ=255) tAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttc > 2:1334049‑M1/1‑61 (MQ=255) tAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttc > 1:1950711‑M1/1‑61 (MQ=255) tAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgtt < 1:1399855‑M1/135‑75 (MQ=255) aTAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatgga > 2:966789‑M1/1‑55 (MQ=255) aTAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatgga > 2:816965‑M1/1‑55 (MQ=255) aTAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatgga > 2:2455637‑M1/1‑55 (MQ=255) aTAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatgga > 1:404477‑M1/1‑55 (MQ=255) aTAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgat < 2:2073430‑M1/108‑54 (MQ=255) aGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaag < 2:317293‑M1/136‑84 (MQ=255) aaGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagt > 2:669371‑M1/1‑51 (MQ=255) aaGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagt > 1:1012580‑M1/1‑51 (MQ=255) aaGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagt > 1:1762832‑M1/1‑51 (MQ=255) ggTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccactt > 2:1622137‑M1/1‑45 (MQ=255) ggTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccactt > 1:2109400‑M1/1‑45 (MQ=255) ggTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccactt > 2:2172105‑M1/1‑45 (MQ=255) tCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgt > 2:2282863‑M1/1‑43 (MQ=255) cGTTCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgactaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatt > 1:144401‑M1/1‑38 (MQ=255) ttCTACGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaattt > 1:536259‑M1/1‑36 (MQ=255) cGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacg > 2:944130‑M1/1‑31 (MQ=255) cGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacg > 2:473445‑M1/1‑31 (MQ=255) cGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccggtgttcgatggaagtcccacttgtaaatttcccacg > 2:1601445‑M1/1‑31 (MQ=255) cGAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctactacccaatgaccaaaatctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacg > 1:230385‑M1/1‑31 (MQ=255) gAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacga > 2:265413‑M1/1‑30 (MQ=255) gAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacga > 2:101659‑M1/1‑30 (MQ=255) gAATGTAACCAGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacga > 2:1082131‑M1/1‑30 (MQ=255) gTAACCAGACATGATCGTGACTCACTtcgaatagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgatttt < 1:1580978‑M1/136‑111 (MQ=255) aCCAGACATGATCGTGACTCACAtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaacccttgattaacagatgttggccgtagttcgaaggaagtcccacttgtaaatttcccacgattttc > 2:555279‑M1/1‑23 (MQ=255) aGACATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctc > 1:850650‑M1/1‑20 (MQ=255) cATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcact < 1:645160‑M1/135‑119 (MQ=255) cATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcact < 1:1839898‑M1/135‑119 (MQ=255) cATGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctca < 1:1739197‑M1/133‑117 (MQ=255) tGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcactcgg > 2:153157‑M1/1‑15 (MQ=255) tGATCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcactcgg > 2:1695926‑M1/1‑15 (MQ=255) aTCGTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcactcggt > 1:566702‑M1/1‑13 (MQ=255) gTGACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcactcggtgctg < 1:1963882‑M1/136‑127 (MQ=255) gACTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccccgattttcgctcactcggtgctggc < 2:2162118‑M1/136‑129 (MQ=255) cTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcactcggtgctggcgg > 1:1884115‑M1/1‑6 (MQ=255) cTCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgat > 1:885252‑M1/1‑6 (MQ=255) cTCACAtcgacaagaaagcacagtatctacttcccaaagaccaaaagctaaccgttgattaacagatgttggccgttgttcgatggaagtcccacttgtaaatttcccacgaatttctctcactcggtgctggcgg > 1:980905‑M1/1‑6 (MQ=255) tCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcactcggtgctggcgga < 2:6215‑M1/136‑132 (MQ=255) tCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcactcggtgctggcgga < 1:828833‑M1/136‑132 (MQ=255) tCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcactcggtgctggcgga < 2:2137033‑M1/136‑132 (MQ=255) tCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcactcggtgctggcgg > 1:207348‑M1/1‑5 (MQ=255) tCACTtcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcactcggtgctggcgg > 1:1418584‑M1/1‑5 (MQ=255) ttcgactagaaagcaccgtatctacttcccaatgaccaaaagctaaccgttgattaacagttgttggccgttgttcgatggaagtcccacttgtaaatttcccacgattttcgctcactcggtgctggcggacatt < 2:1308103‑M1/136‑136 (MQ=255) | TTGGGGACCGAAGGCCCCCATAAACTTGCCAAAGGCGGTGTTTAGAGCCTTAGCCGTTCTATTAGGGGCTTTGATAGCCCATAGAAGTCGGGTCTTACGTTCTACGAATGTAACCAGACATGATCGTGACTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_40/497‑631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |