| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_12 | 1 = | 0 (0.000) | 89 (0.280) +ATGGCAACGTCCTACCCTCGCAGGGAGCGATCCCCCAACTACTCTCGGCGCTAAGAAGCTT |
35/138 | 0.2 | 100% | intergenic (–/‑8) | –/rasttk_feature_creation_tool=tRNAscan‑SE | –/tRNA‑Asn‑GTT |
| ? | TrimmedAssembly_T66_contig_28 | 1 = | 0 (0.000) | intergenic (–/+125) | –/rasttk_feature_creation_tool=RNA_reps_LSU_rRNA | –/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
Only 100 of 718 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTGGTTAAGT > TrimmedAssembly_T66_contig_28/1‑135 | ggcgggctcgaaccgtcgacatcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagctta < 2:501717‑M1/1‑1 (MQ=255) accgtcgacatcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTc > 2:1200425‑M1/124‑136 (MQ=255) cgtcgacatcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCg > 2:884560‑M2/122‑135 (MQ=255) cgtcgacatcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaacgactctcggcgctaagaagcttAACTTCTGTGTACGa < 2:1248561‑M2/15‑1 (MQ=255) cgtcgacatcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGa > 1:2252418‑M1/122‑136 (MQ=255) acatcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATgg > 1:1535714‑M2/117‑136 (MQ=255) catcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATgg < 1:1463701‑M2/20‑1 (MQ=255) catcttgattaacagtcaagcgctctaccaactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATgg > 1:66846‑M1/116‑135 (MQ=255) ttaacagtcaagcgctctaccaactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGgt < 1:1031499‑M2/28‑1 (MQ=255) taacagtcaagcgctctaccaactgagctatgacggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGgtgt > 1:348995‑M2/107‑136 (MQ=255) cgctctaccaactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATgg > 2:151745‑M2/96‑115 (MQ=255) caactgagctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTc > 1:1583240‑M2/88‑135 (MQ=255) caactgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTc < 1:1744618‑M1/48‑1 (MQ=255) actgagctatgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTcacc > 2:1004515‑M1/86‑136 (MQ=255) ctatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTGCTCGCCATCGTCACCACACTa > 1:762209‑M2/80‑136 (MQ=255) tatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACt < 2:1500416‑M2/56‑1 (MQ=255) tatgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTAt < 2:1595221‑M2/58‑1 (MQ=255) atgtcggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTAtt > 2:1061223‑M2/78‑136 (MQ=255) atgtcggaataatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTAtt < 2:1113496‑M1/59‑1 (MQ=255) cggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTgaga > 2:1323678‑M2/74‑136 (MQ=255) cggaataatcgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTgaga > 1:2477506‑M2/74‑136 (MQ=255) tactcgtagggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACtt < 2:397777‑M2/68‑1 (MQ=255) taatcgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACtt < 1:1104859‑M1/68‑1 (MQ=255) tgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGc < 1:964793‑M2/72‑1 (MQ=255) tgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGc < 2:451509‑M2/72‑1 (MQ=255) cgtatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGc < 2:2171896‑M2/72‑1 (MQ=255) cgcatggcgacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGc < 2:816661‑M2/72‑1 (MQ=255) cgcatggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGc > 2:1404341‑M1/65‑136 (MQ=255) atggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGctc < 2:2274783‑M1/74‑1 (MQ=255) ggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCa > 1:1085011‑M2/60‑136 (MQ=255) ggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCa > 2:2136059‑M2/60‑136 (MQ=255) ggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCa < 2:2220098‑M2/77‑1 (MQ=255) ggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCa > 1:613548‑M2/60‑136 (MQ=255) ggcaacgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCa > 1:242661‑M2/60‑136 (MQ=255) cgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACt < 2:1970208‑M2/82‑1 (MQ=255) cgtcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACt < 1:148688‑M2/82‑1 (MQ=255) cgtcctaccctcgcagggagcgatcccccaacgactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACt < 1:1246196‑M2/82‑1 (MQ=255) tcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCACAACTAg > 2:1372844‑M2/53‑136 (MQ=255) tcctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAg > 1:1772791‑M2/53‑136 (MQ=255) cctaccctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTATGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAg < 2:242661‑M2/84‑1 (MQ=255) ctcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAatat < 1:542169‑M2/91‑1 (MQ=255) ctcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCAt > 2:2256562‑M1/46‑89 (MQ=255) tcgcagggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATc > 1:1006993‑M2/45‑136 (MQ=255) tcgcagggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACt < 1:2562841‑M1/82‑1 (MQ=255) agggagcgatcccccaactactctcggcgctaagacgcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat > 2:2014923‑M2/41‑136 (MQ=255) agggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat > 2:1639904‑M2/41‑136 (MQ=255) agggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat > 1:1421568‑M2/41‑136 (MQ=255) agggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat > 2:525203‑M2/41‑136 (MQ=255) agggagcgatcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat < 2:1829060‑M1/96‑1 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATgg < 1:2534665‑M2/20‑1 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTTTCCTTCTCGCCATCGTCACCACACTCTTGAGAAACTTGTGCTCTCTAAACTAGACAATAGCAAata > 2:2488262‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACtt < 1:1845443‑M2/68‑1 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACACTATCAAata > 2:2535160‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 2:2086648‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 2:127402‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 2:272272‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 2:1482802‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 2:2324525‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 1:119237‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 1:377650‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 1:1565310‑M2/40‑136 (MQ=255) gggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 2:1850885‑M2/40‑136 (MQ=255) ggagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAata > 1:1305206‑M2/39‑135 (MQ=255) gagcgatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAat < 1:1908299‑M2/96‑1 (MQ=255) gatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTc < 1:1970499‑M2/102‑1 (MQ=255) gatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCa > 1:1660662‑M2/34‑136 (MQ=255) gatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCa > 2:317215‑M2/34‑136 (MQ=255) gatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCa > 1:1625138‑M2/34‑136 (MQ=255) gatcccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAAATTGTGATCTCAATACTAGACAAGATAAAAAATCTACa > 1:845423‑M2/34‑136 (MQ=255) tcccccatctactatcggcgctaagaagcttAAATTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTATACAATATCAAATATCTTCat < 2:954359‑M2/104‑1 (MQ=255) tcccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCat > 1:565502‑M1/32‑135 (MQ=255) ccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATg > 2:1724941‑M2/30‑136 (MQ=255) ccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATg > 1:2035440‑M2/30‑136 (MQ=255) ccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATg > 2:642429‑M2/30‑136 (MQ=255) ccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATg > 2:570404‑M2/30‑136 (MQ=255) ccccaactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATg > 1:2169813‑M2/30‑136 (MQ=255) ccccaactactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATg < 2:1563574‑M1/107‑1 (MQ=255) caactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAAc < 1:889508‑M2/110‑1 (MQ=255) caactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAAc < 1:1275086‑M2/110‑1 (MQ=255) aactactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAAcc > 2:1693460‑M2/26‑136 (MQ=255) actactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCg > 1:1396867‑M1/25‑136 (MQ=255) actactctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCg > 1:2274783‑M1/25‑136 (MQ=255) ctactctcggcgctaataagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCgg > 2:723068‑M2/24‑136 (MQ=255) ctactctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCgg > 2:1155355‑M2/24‑136 (MQ=255) actctcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGa > 1:2224768‑M2/22‑135 (MQ=255) actctcggcgccaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGaa > 1:2296393‑M1/22‑136 (MQ=255) tcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATCTCAAATATCTTCATATGAACCGGAACAcc > 1:2377566‑M2/18‑136 (MQ=255) tcggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACAcc > 1:1708855‑M2/18‑136 (MQ=255) cggcgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCa > 2:599117‑M2/17‑136 (MQ=255) cgctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAt < 1:1162007‑M2/122‑1 (MQ=255) gctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAtt > 1:2504146‑M2/13‑135 (MQ=255) gctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAtt > 1:714497‑M2/13‑135 (MQ=255) gctaagaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAAtt < 2:1769790‑M2/123‑1 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 2:353378‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 1:485403‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 1:2148747‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 2:1910899‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 2:665293‑M1/9‑136 (MQ=255) agaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTg > 2:2377566‑M1/9‑136 (MQ=255) gaagcttAACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTgg < 2:759433‑M1/129‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACTTCTGTGTTCGACATGGGAACAGGTGTATCCTTCTCGCCATCGTCACCACACTATTGAGAAACTTGTGCTCTCAAAACTAGACAATATCAAATATCTTCATATGAACCGGAACACCAATTACTTGGTTAAGT > TrimmedAssembly_T66_contig_28/1‑135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |