| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_28 | = 3183 | 0 (0.000) | 274 (0.400) +TGAGAGTTAAATCTCTCAAAACTAAACAAAGTTTCGACGCG |
63/178 | 1.5 | 100% | intergenic (‑135/–) | rasttk_feature_creation_tool=RNA_reps_LSU_rRNA/– | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA/– |
| ? | TrimmedAssembly_T66_contig_32 | = 1640 | 0 (0.000) | intergenic (+24/–) | rasttk_feature_creation_tool=RNA_reps_SSU_rRNA/– | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/– | |||||
Only 100 of 710 total aligned reads displayed.
GTCGGTGGGGTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_32/1505‑1640 | tGGGGTAACCTTTTAGGAACCAGCTGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcg > 2:598968‑M2/1‑131 (MQ=255) tGGGGTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttct > 2:125621‑M1/1‑131 (MQ=255) ggggTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttc > 2:2185206‑M1/1‑130 (MQ=255) ggTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcga > 1:847701‑M1/1‑128 (MQ=255) ggTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcga < 2:2230728‑M2/136‑9 (MQ=255) ggTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCAGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcga > 1:1937204‑M1/1‑128 (MQ=255) tAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaa < 2:1136298‑M1/135‑10 (MQ=255) tAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaa < 1:2005865‑M1/135‑10 (MQ=255) tAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaa < 1:727386‑M1/135‑10 (MQ=255) cTTTTAGGAACCAGCTGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaacttt > 1:66261‑M2/1‑122 (MQ=255) cTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaacttt < 1:802930‑M1/136‑15 (MQ=255) cTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaacttt > 2:2534616‑M1/1‑122 (MQ=255) ggAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttag > 2:2257746‑M1/1‑116 (MQ=255) aCCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttt < 1:1538520‑M1/136‑24 (MQ=255) aCCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagtt > 2:723139‑M2/1‑113 (MQ=255) ccAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagtttt < 2:1232684‑M1/136‑25 (MQ=255) gccgccTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgag < 1:2449908‑M2/136‑28 (MQ=255) gccTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagaga < 2:1344050‑M2/136‑31 (MQ=255) cAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaat > 1:1477992‑M1/1‑93 (MQ=255) cAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaat > 2:917369‑M1/1‑93 (MQ=255) cAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaat > 2:752633‑M1/1‑93 (MQ=255) cAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaa < 1:1686428‑M2/136‑44 (MQ=255) aGATGATTAGGGTGAAGTCTAAACAAGGTATCCGTAGGAGAAACTGCGGCTTGATCACCTCCTTTCTAAGGAATATTACTGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatt > 2:2017285‑M1/1‑92 (MQ=255) aGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatt > 2:1708127‑M1/1‑92 (MQ=255) aGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatt > 1:1001015‑M1/1‑92 (MQ=255) aGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaa < 2:2126658‑M2/135‑44 (MQ=255) aGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaa < 2:15324‑M2/135‑44 (MQ=255) aGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatt < 1:330973‑M2/124‑33 (MQ=255) aGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatt > 1:626657‑M2/1‑92 (MQ=255) atTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaata > 2:1821362‑M1/1‑87 (MQ=255) atTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaata > 1:711727‑M1/1‑87 (MQ=255) atTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgt < 2:1860686‑M2/136‑50 (MQ=255) gAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttt < 2:36591‑M1/135‑57 (MQ=255) gAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaa < 2:197901‑M2/136‑58 (MQ=255) aGTCGTAACAAGGTAGCCGTAGGAGAACCTGCTTCTTGATCAACTCCTTTATAATGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttt < 2:689012‑M1/135‑59 (MQ=255) tCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaact < 2:1804240‑M2/136‑62 (MQ=255) tCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaact < 1:434908‑M2/136‑62 (MQ=255) tCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaact < 1:475186‑M2/136‑62 (MQ=255) tCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaact < 2:283527‑M2/136‑62 (MQ=255) cGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgg < 1:1325205‑M1/135‑62 (MQ=255) cGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgg < 2:2073458‑M1/135‑62 (MQ=255) cGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaact > 1:1987763‑M2/1‑74 (MQ=255) aaCAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagat > 1:2230728‑M2/1‑71 (MQ=255) cAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataa < 2:2276148‑M2/136‑68 (MQ=255) cAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttc > 1:107760‑M2/1‑69 (MQ=255) tAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct < 1:546893‑M1/135‑72 (MQ=255) tAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct < 1:281404‑M1/135‑72 (MQ=255) tAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct < 1:121644‑M1/135‑72 (MQ=255) tAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtgtagttttgagaggtctaactctcaatttactacgcgtattttgggcctatagct < 2:780781‑M1/135‑72 (MQ=255) tAGCCGGAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct < 2:2487837‑M1/135‑72 (MQ=255) gTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctg > 1:356250‑M1/1‑59 (MQ=255) gTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatat < 1:2348227‑M2/136‑78 (MQ=255) aGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggt < 2:142052‑M1/136‑80 (MQ=255) gaACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaacctttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagagaatatcaaatatattttt < 1:957300‑M2/136‑84 (MQ=255) aCCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttaga < 2:1619306‑M1/135‑85 (MQ=255) aCCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttaga < 2:2099070‑M1/135‑85 (MQ=255) aCCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttaga < 1:1042357‑M1/135‑85 (MQ=255) aCCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttaga < 1:1870560‑M1/135‑85 (MQ=255) ccTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagc < 1:1821362‑M1/136‑87 (MQ=255) ccTGCGGCTGGATCACCTCCTTTCTAAGGAATAGTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagc < 2:670248‑M1/136‑87 (MQ=255) cTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagc > 1:1595782‑M1/1‑49 (MQ=255) cTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagc > 2:2324580‑M1/1‑49 (MQ=255) cTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaact > 2:1114192‑M2/1‑49 (MQ=255) cTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaact < 1:1114192‑M2/86‑38 (MQ=255) tGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcata > 1:2114437‑M2/1‑48 (MQ=255) tGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcata > 1:2054526‑M2/1‑48 (MQ=255) tGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaacactcaaaacttgttctttgaaaactagataatatcaaatatattttttcata > 1:899818‑M2/1‑48 (MQ=255) tGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCAACACAcgcgtcgaaactttgtttagttttgagagatttaacactcaaaacttgttctttgaaaactagataatatcaaatatattttttcata > 2:2342050‑M2/1‑48 (MQ=255) gCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataa < 2:1669651‑M2/136‑90 (MQ=255) tGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcct < 1:2388910‑M1/136‑95 (MQ=255) tCACCTCCTTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgata < 1:1290490‑M1/136‑99 (MQ=255) cACCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgag < 1:1775346‑M2/136‑100 (MQ=255) aCCTCCTTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaacattgtttagttttgagagatttaactctcaaaacttgttcttttaaaactatataatatcaaatattttttttcataattatacagaga < 1:762435‑M2/136‑101 (MQ=255) cctcctTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagc < 2:1178750‑M1/136‑102 (MQ=255) cctTTCTAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaaca < 2:555573‑M2/135‑104 (MQ=255) ctTTCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggt < 1:2303257‑M1/110‑80 (MQ=255) tCTAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggt < 2:2453697‑M1/136‑109 (MQ=255) tAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcg > 2:421803‑M1/1‑26 (MQ=255) tAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcg > 1:1390‑M1/1‑26 (MQ=255) tAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggt > 2:1068572‑M1/1‑26 (MQ=255) tAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagct < 2:1039594‑M1/97‑72 (MQ=255) tAAGGAATATTACGGAAACCTACACAttcttcgaaactttgtttagttttgagag < 1:2540394‑M1/55‑30 (MQ=255) tAAGGAATATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgtt < 1:1258445‑M2/136‑111 (MQ=255) aaTATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttg < 1:391713‑M2/136‑116 (MQ=255) aaTATTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatt < 2:945979‑M2/53‑33 (MQ=255) atatTACGGAAACCTACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagtacaccgcgttttttga > 1:2192535‑M2/1‑20 (MQ=255) tatTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttc < 1:2261171‑M1/136‑118 (MQ=255) tatTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttc < 1:1140318‑M1/136‑118 (MQ=255) atTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttca < 1:991711‑M1/136‑119 (MQ=255) atTACGGAAACCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttca < 2:2394790‑M1/136‑119 (MQ=255) atTACGGAAACCTACACAttcttcgaaactttgtttagtttt < 1:2144699‑M1/42‑25 (MQ=255) aCCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttcaagtccattt < 2:462481‑M1/136‑128 (MQ=255) aCCTACACAttcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttcaagtccattt < 2:853788‑M1/136‑128 (MQ=255) tACACAcgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttgagttttttattgaag < 1:1636976‑M2/136‑131 (MQ=255) cacattcttcgaaactttgtttagttttgagagttataactatcaatttaataagcgttttttgggccaatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttcaagtccatttaggcc < 1:928428‑M1/136‑133 (MQ=255) cacattcttcgaaactttgtttagttttgagaggtctaactctcaatttaataagcgttttttgggcctatagctcagctggtttagagcgcacgcctgataagcgtgaggtcgatggttcaagtccatttaggcc < 2:334820‑M1/136‑133 (MQ=255) acacgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttgagttttttattgaagttt > 1:1710273‑M2/1‑3 (MQ=255) acacgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttgagttttttattgaagttt > 1:508112‑M2/1‑3 (MQ=255) cacgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaccaccgcgttttttgagttttttattgaagttta > 2:511923‑M2/1‑2 (MQ=255) acgcgtcgaaactttgtttagttttgagagatttaactctcaaaacttgttctttgaaaactagataatatcaaatatattttttcataatgaaaccgagaacaccgcgttttttgagttttttattgaagtttaa < 2:1907666‑M2/136‑136 (MQ=255) | GTCGGTGGGGTAACCTTTTAGGAACCAGCCGCCTAAGGTGGGACAGATGATTAGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCTCCTTTCTAAGGAATATTACGGAAACCTACACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > TrimmedAssembly_T66_contig_32/1505‑1640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |