BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	TrimmedAssembly_T66_contig_3	176059 =	210 (0.820)	149 (0.630)	68/240	0.4	41.8%	coding (556/804 nt)	rasttk_feature_annotation_tool=annotate_proteins_km er_v2	hypothetical protein
*	?	TrimmedAssembly_T66_contig_3	= 178058	221 (0.930)	149 (0.630)	68/240	0.4	41.8%	coding (242/633 nt)	rasttk_feature_annotation_tool=annotate_proteins_km er_v2	Aggregation promoting factor

Only 100 of 407 total aligned reads displayed.

GTTTGAGTCGTCTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAATCGTCGTGTTATGATCAGCAGCAATGGCAGAAACCG  >  TrimmedAssembly_T66_contig_3/177923‑178193

gTTTGAGTCGTCTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCtgtg                                                                                                                                         >  2:1117363/1‑136 (MQ=255)

  ttGAGTCGTCTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGt                                                                                                                                        >  1:47329‑M2/1‑134 (MQ=255)

    gAGTCGTCTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttga                                                                                                                                     >  2:498272‑M2/1‑132 (MQ=255)

    gAGTCGTCTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttga                                                                                                                                     >  1:339600‑M2/1‑132 (MQ=255)

     aGTCGTCTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaa                                                                                                                                    <  1:1136804‑M2/136‑6 (MQ=255)

       tcgtcTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaag                                                                                                                                   <  2:2069083‑M2/135‑7 (MQ=255)

        cgtcTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaag                                                                                                                                   >  1:1256572‑M2/1‑128 (MQ=255)

        cgtcTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaag                                                                                                                                   >  2:2045121‑M2/1‑128 (MQ=255)

        cgtcTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaag                                                                                                                                   >  1:1766503‑M2/1‑128 (MQ=255)

         gtcTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcg                                                                                                                                >  1:2236802‑M2/1‑127 (MQ=255)

           cTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgtt                                                                                                                              >  1:2481339‑M2/1‑125 (MQ=255)

           cTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTg                                                                                                                              <  2:1859713/136‑1 (MQ=255)

             gAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTg                                                                                                                              <  1:10031/134‑1 (MQ=255)

             gAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTg                                                                                                                              >  2:10031/1‑134 (MQ=255)

             gAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGt                                                                                                                            >  2:1314130/1‑136 (MQ=255)

               gcagcaGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAg                                                                                                                          >  1:1417712/1‑136 (MQ=255)

                    agGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttg                                                                                                                       >  1:763601‑M2/1‑116 (MQ=255)

                    agGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGc                                                                                                                       <  1:2562253/134‑1 (MQ=255)

                      gTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATc                                                                                                                   >  2:1036995/1‑136 (MQ=255)

                      gTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATc                                                                                                                   >  1:2416672/1‑136 (MQ=255)

                      gTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATc                                                                                                                   >  1:1617794/1‑136 (MQ=255)

                      gTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATc                                                                                                                   >  2:2410673/1‑136 (MQ=255)

                                ttGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttga                                                                                                          >  1:6927‑M2/1‑104 (MQ=255)

                                ttGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACt                                                                                                         <  1:1981231/136‑1 (MQ=255)

                                ttGTGTTTGACTTGAGTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgat                                                                                                         >  2:1392302‑M2/1‑104 (MQ=255)

                                   tgtTTGACTTGATTGGGTCTGGCTAGATTGGCTCGGTTGAGCTTGAGTATGAATAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTTAAGTCGTGTTAGTGCTATAACAATATACTTCa                                                                                                      >  2:343268/1‑136 (MQ=255)

                                    gtTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCaa                                                                                                     >  1:824181/1‑136 (MQ=255)

                                          cTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAgttgtt                                                                                               <  1:1854084/136‑1 (MQ=255)

                                               ttGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCa                                                                                          <  1:1098440/136‑1 (MQ=255)

                                               ttGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCa                                                                                          <  2:106997/136‑1 (MQ=255)

                                                tGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcg                                                                                                                                >  1:937904‑M2/1‑88 (MQ=255)

                                                tGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcg                                                                                                                                <  2:937904‑M2/97‑10 (MQ=255)

                                                      tGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGa                                                                                   >  2:2148591/1‑136 (MQ=255)

                                                         cTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGAGTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcactt                                                                                 >  2:2506482‑M2/1‑79 (MQ=255)

                                                          tAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttga                                                                               >  2:1754857‑M2/1‑78 (MQ=255)

                                                          tAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaag                                                                                                                                   <  2:1722503‑M2/84‑7 (MQ=255)

                                                           aGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAg                                                                              >  2:1795021/1‑136 (MQ=255)

                                                              ttGGCTCGGTTGAGCTTGAGTTTGGCTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatga                                                                            >  1:106806‑M2/1‑74 (MQ=255)

                                                              ttGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatg                                                                             >  1:144126‑M2/1‑74 (MQ=255)

                                                              ttGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGt                                                                             <  1:1670850/134‑1 (MQ=255)

                                                              ttGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGt                                                                             <  1:302708/134‑1 (MQ=255)

                                                               tGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAATTTa                                                                           >  2:461119/1‑135 (MQ=255)

                                                                ggCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaa                                                                           <  2:435323‑M2/134‑63 (MQ=255)

                                                                ggCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaa                                                                           <  2:1839909‑M2/134‑63 (MQ=255)

                                                                ggCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttg                                                                                                                       <  1:2062838‑M2/90‑19 (MQ=255)

                                                                ggCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAAc                                                                         >  1:60030/1‑136 (MQ=255)

                                                                    cGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCt                                                                     <  1:1186910/136‑1 (MQ=255)

                                                                    cGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCt                                                                     <  2:2360972/136‑1 (MQ=255)

                                                                     ggTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCa                                                                                          >  2:87045/1‑114 (MQ=255)

                                                                     ggTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCa                                                                                          <  1:1818052/114‑1 (MQ=255)

                                                                     ggTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCtt                                                                    >  2:2239872/1‑136 (MQ=255)

                                                                     ggTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCtt                                                                    >  1:1341237/1‑136 (MQ=255)

                                                                     ggTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCtt                                                                    >  2:2016485/1‑136 (MQ=255)

                                                                     ggTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCtt                                                                    >  1:874708/1‑136 (MQ=255)

                                                                     ggTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCtt                                                                    >  2:571362/1‑136 (MQ=255)

                                                                       ttGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgact                                                                   >  1:202037‑M2/1‑65 (MQ=255)

                                                                         gAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgtttatgatgcagctgagctagtagcacttgatgaagcttgactagt                                                                <  1:1712353‑M2/136‑74 (MQ=255)

                                                                         gAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagt                                                                >  1:972558‑M2/1‑63 (MQ=255)

                                                                         gAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagt                                                                <  2:1931846‑M2/136‑74 (MQ=255)

                                                                         gAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagt                                                                >  2:1461484‑M2/1‑63 (MQ=255)

                                                                         gAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagt                                                                <  2:1539471‑M2/136‑74 (MQ=255)

                                                                             ttGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagtggt                                                             >  1:539903‑M2/1‑59 (MQ=255)

                                                                             ttGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGt                                                              <  1:1034519/134‑1 (MQ=255)

                                                                             gtgAGTTTGTCGAGTCTGAGCTGATGATGGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagtgg                                                              >  2:2163290‑M2/2‑59 (MQ=255)

                                                                               gAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGtt                                                          <  2:606126/136‑1 (MQ=255)

                                                                                 gTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagtggttgca                                                         >  2:1523749‑M2/1‑55 (MQ=255)

                                                                                 gTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagtggttgca                                                         >  2:535252‑M2/1‑55 (MQ=255)

                                                                                 gTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgtcgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagtggttgca                                                         >  2:1980450‑M2/1‑55 (MQ=255)

                                                                                   ttGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGc                                                       <  1:439663/135‑1 (MQ=255)

                                                                                    tGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTTTTTAGTCTTCTGTGTTGAAGTCGTTGTAGTGATATCAACATTTACTTCAAGTTGTTGAACAACTAAGATCAAGTTAACGTATTTTAAGAGTTTAGCtt                                                     >  2:1688149/1‑136 (MQ=255)

                                                                                    tGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCtt                                                     >  1:174633/1‑136 (MQ=255)

                                                                                       cTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCttgtt                                                  <  1:1483586/136‑1 (MQ=255)

                                                                                        tAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCttgttg                                                 >  2:901840/1‑136 (MQ=255)

                                                                                        tAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCttgttg                                                 >  2:2531116/1‑136 (MQ=255)

                                                                                                  tgatgaTTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTTTTGACCAACTAAGATCAATTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCa                                       >  2:1382856/1‑136 (MQ=255)

                                                                                                   gatgatTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCaa                                      >  2:279004/1‑136 (MQ=255)

                                                                                                   gatgatTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCaa                                      <  2:696657/136‑1 (MQ=255)

                                                                                                   gatgatTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCaa                                      <  2:2315611/136‑1 (MQ=255)

                                                                                                   gatgagTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCaa                                      <  2:2565835/136‑1 (MQ=255)

                                                                                                     tgatTGTGTCGTTGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAAtc                                    <  2:120630/136‑1 (MQ=255)

                                                                                                       atTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagtggttgcagcagaacttgaagcttggctagc                                  <  1:651174‑M2/136‑104 (MQ=255)

                                                                                                       atTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagtggttgcagcagaacttgaagcttggctagc                                  <  2:2341572‑M2/136‑104 (MQ=255)

                                                                                                       atTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAg                                                                                    >  2:2468050/1‑86 (MQ=255)

                                                                                                       atTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAg                                                                                    <  1:2468050/86‑1 (MQ=255)

                                                                                                       atTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGt                                                                             >  1:2278911/1‑93 (MQ=255)

                                                                                                       atTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGt                                                                             <  2:2278911/93‑1 (MQ=255)

                                                                                                       atTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAAtcg                                   >  1:356635/1‑135 (MQ=255)

                                                                                                       atTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAAtcg                                   >  2:1600050/1‑135 (MQ=255)

                                                                                                        ttGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTCCTTCATGTTGTGGACCAACTAAGATCAAGTGAACGTCTTTTAAGTGGTGAGCTTGTTGGATTGCATCAAtcgtc                                 <  2:660521/136‑1 (MQ=255)

                                                                                                        ttGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAAtcgtc                                 <  1:1314130/136‑1 (MQ=255)

                                                                                                          gtgtCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAATcgtcgt                               <  2:2475314/136‑1 (MQ=255)

                                                                                                          gtgtCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAATcgtcgt                               <  2:1341237/136‑1 (MQ=255)

                                                                                                                   tCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAAtcgtc                                 >  1:2504413/1‑125 (MQ=255)

                                                                                                                       ttgttgAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAATCGTCGTGTTATGATcagca                  <  1:2300625/136‑1 (MQ=255)

                                                                                                                       ttgttgAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAATCGTCGTGTTATGATcagca                  <  1:1385646/136‑1 (MQ=255)

                                                                                                                          ttgAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGt                                                              <  1:1595708/89‑1 (MQ=255)

                                                                                                                                 gtcTGTGttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagtggttgcagcagaacttgaagcttggctagcagctgattgcgttgagcttgctgaag        >  2:374608‑M2/1‑7 (MQ=255)

                                                                                                                                   cTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAATCGTCGTGTTATGATCAGCAGCAATGGCAGa       <  1:2197139/135‑1 (MQ=255)

                                                                                                                                       gttgaagtcgttgaggttgttgaagctgttgatgatgcagctgagctagtagcacttgatgaagcttgactagtggttgcagcagaacttgaagcttggctagcagctgattgcgttgagcttgctgaagaagca   >  1:1889433‑M2/1‑1 (MQ=255)

                                                                                                                                       gtTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATAGCATCAATCGTCGTGTTATGATCAGCAGCAATGGCAGAAACCg  >  2:7795/1‑136 (MQ=255)

GTTTGAGTCGTCTGAGCAGCAGGTTTGCTAGTTTGTGTTTGACTTGATTGGGTCTGGCTAGCTTGGCTCGGTTGAGCTTGAGTTTGACTAGTCTGAGCTGATGATTGTGTCGTGGTCGTTTGTTGAGTCGTCTGTGTTGAAGTCGTGGTAGTGCTATCACCATTTACTTCAAGTTGTTGACCAACTAAGATCAAGTTAACGTCTTTTAAGTGGTTAGCTTGTTGGATTGCATCAATCGTCGTGTTATGATCAGCAGCAATGGCAGAAACCG  >  TrimmedAssembly_T66_contig_3/177923‑178193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.