New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	TrimmedAssembly_T66_contig_1	= 88613	152 (0.970)	151 (0.920)	58/260	0.2	49.8%	coding (224/300 nt)	rasttk_feature_annotation_tool=elepa@bvbrc	hypothetical protein
	?	TrimmedAssembly_T66_contig_39	1 =	NA (NA)					intergenic (–/+397)	–/rasttk_feature_annotation_tool=annotate_proteins_km er_v2	–/Aggregation promoting factor

TTCGTTGTGGACTAGTCGTCAAACTGTCGGGGGTTCGGGACTGTACTTAGTCAGGAAATTAGTTGGATTTTCTCCGTTAAGGTTGGTGAATTGTTAAATAAAAACATGTGGTATTTTGGTTGGGAGAGTGGGTCGT  >  TrimmedAssembly_T66_contig_39/1‑136 |                                                                                                                                        ttCGTTGTGGACTAGTCGTCAAACTGTCGGGGGTTCGGGACTGTACTTAGTCAGGAAATTAGTTGGATTTTCTCCGTTAAGGTTGGTGAATTGTTAAATAAAAACATGTGGTATTTTGGTTGGGAGAGTGGgtcgt  <  1:1138014/136‑1 (MQ=11) ttCGTTGTGGACTAGTCGTCAAACTGTCGGGGGTTCGGGACTGTACTTAGTCAGGAAATTAGTTGGATTTTCTCCGTTAAGGTTGGTGAATTGTTAAATAAAAACATGTGGTATTTTGGTTGGGAGAGTGGgtcgt  <  1:2306658/136‑1 (MQ=11) |                                                                                                                                        TTCGTTGTGGACTAGTCGTCAAACTGTCGGGGGTTCGGGACTGTACTTAGTCAGGAAATTAGTTGGATTTTCTCCGTTAAGGTTGGTGAATTGTTAAATAAAAACATGTGGTATTTTGGTTGGGAGAGTGGGTCGT  >  TrimmedAssembly_T66_contig_39/1‑136

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.