| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | TrimmedAssembly_T66_contig_1 | 88,588 | G→A | N83N (AAC→AAT) | rasttk_feature_annotation_tool=elepa@bvbrc ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | TrimmedAssembly_T66_contig_1 | 88,588 | 0 | G | A | 89.0% | 5229.6 / inf | 1653 | N83N (AAC→AAT) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (74/107); new base A (703/765); total (777/876) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.25e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1683 total aligned reads displayed.
TTTGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTTGTGGGG > TrimmedAssembly_T66_contig_1/88454‑88721 | ggCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTac > 2:2256807/1‑136 (MQ=255) gCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATACATGGGGTATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTac < 1:1587366/135‑1 (MQ=255) tAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTacac < 2:947422/135‑1 (MQ=255) tAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTacac < 2:1221657/135‑1 (MQ=255) tAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTacac < 1:587950/135‑1 (MQ=255) tAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTacac < 1:134052/135‑1 (MQ=255) tAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTacac < 1:1691195/135‑1 (MQ=255) gATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATAtttt < 1:329994/136‑1 (MQ=255) gATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt < 1:748461/136‑1 (MQ=255) gATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATAtttt < 1:636442/136‑1 (MQ=255) tAATTTCTGTTGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc < 1:968350/136‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTAc > 1:501349/1‑136 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTa < 2:470916/135‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc < 2:1272564/136‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc < 2:2560142/136‑1 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc > 1:300066/1‑136 (MQ=255) tAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc > 1:2466420/1‑136 (MQ=255) tttCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGct < 2:1849385/136‑1 (MQ=255) ttCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGctc < 1:6591/136‑1 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGctc > 1:1883827/1‑135 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTAc > 2:1465146/1‑131 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGctct < 1:1048547/136‑1 (MQ=255) tCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGAATTTACACAAGATATTTTACGctc > 2:2026348/1‑135 (MQ=255) cTGTGGTAAGTTCATTCATGGGGTATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCtctc < 2:1978344/136‑1 (MQ=255) tgtgGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCt < 1:1741546‑M1/136‑2 (MQ=255) ggTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttc < 1:431840‑M1/135‑4 (MQ=255) ggTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaa > 1:397197‑M1/1‑132 (MQ=255) tAAGTTCATTAATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATATTTTATGCATTTACACAAGATATTTTAATCTCTCaacttt > 1:2234725‑M1/1‑130 (MQ=255) tcattcatGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaaca < 2:1426959‑M1/134‑10 (MQ=255) tcattcatGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgc < 2:2511749‑M1/135‑11 (MQ=255) tcattcatGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagt > 1:2519015‑M1/1‑126 (MQ=255) tcattcatGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCAGTCCCTATTTCTATACAATTCAGAAATATTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagt > 2:61598‑M1/1‑126 (MQ=255) catGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttg < 1:1635398‑M1/136‑17 (MQ=255) ctgGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcat < 1:1247847‑M1/135‑18 (MQ=255) atGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatg < 2:506103‑M1/136‑18 (MQ=255) tGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTa > 2:2359046/1‑135 (MQ=255) tGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtg < 2:1336852‑M1/136‑19 (MQ=255) gAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatca < 1:2564128‑M1/135‑22 (MQ=255) gAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctat < 2:713406‑M1/135‑22 (MQ=255) aaTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgc < 1:84768‑M1/123‑11 (MQ=255) aTGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaat < 1:1403747‑M1/135‑24 (MQ=255) gCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactcgtcgtcaa > 2:1390955‑M1/1‑110 (MQ=255) ctcctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgt < 1:1948238‑M1/135‑28 (MQ=255) ctcctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatat > 2:1701990‑M1/1‑108 (MQ=255) cctGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaa > 2:247055‑M1/1‑106 (MQ=255) gtgATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttca > 2:283553‑M1/1‑104 (MQ=255) aTGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgacta > 1:2059495‑M1/1‑100 (MQ=255) aTGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattg > 1:243282‑M1/1‑100 (MQ=255) ttttCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTAAACAAGATATTTTACGCTCTCaacttttctatataatgatatattttaaaagaatagtta > 1:718898‑M1/1‑97 (MQ=255) ttttCTGTGGTTACTAAATATCATAAGGGAAGGCAATCCCTATTTCTATACAATTCAGAAATATTTTATGCATTTACACAATATATTTTACGATCTCacttaatttctcactgcctataatatgcgttattccaa > 2:1548234‑M1/1‑97 (MQ=255) tCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggggttcggg > 2:1599216‑M1/1‑94 (MQ=255) tCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttattt > 1:2325830‑M1/1‑95 (MQ=255) cTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttg < 2:2325830‑M1/136‑43 (MQ=255) tgtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCt > 2:1509479/1‑136 (MQ=255) tgtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaa > 2:1309120‑M1/1‑92 (MQ=255) tgtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttgg > 2:116202‑M1/1‑93 (MQ=255) gtgGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggt < 1:1498998‑M1/136‑45 (MQ=255) ggTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGt > 2:2113468/1‑136 (MQ=255) ggTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGTTATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaat > 1:1185053‑M1/1‑89 (MQ=255) ggTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatt > 2:373670‑M1/1‑89 (MQ=255) ggTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaat > 1:1546251‑M1/1‑89 (MQ=255) cTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtg > 1:523936‑M1/1‑84 (MQ=255) aaaTATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactc > 2:2205382‑M1/1‑82 (MQ=255) aaaTATCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactc > 1:2163850‑M1/1‑82 (MQ=255) tatCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaa < 1:1792874‑M1/136‑58 (MQ=255) atCATAAGGGAAGGCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaac < 1:1309120‑M1/136‑59 (MQ=255) ggCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctataataggcgttattccaatcggttatttcattggaatcacgagttagggg > 1:1002293‑M1/1‑66 (MQ=255) gCATTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaa > 1:792168‑M1/1‑65 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggggttcgggactgtacttagtcaggaaattagttggattttc > 1:1517686‑M1/1‑63 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggggttcgggactgtacttagtcaggaaattagttggattttc > 1:2382653‑M1/1‑63 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaa > 2:1943519‑M1/1‑63 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccag > 2:812930‑M1/1‑63 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaa > 2:2411163‑M1/1‑63 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaa < 1:1974829‑M1/136‑74 (MQ=255) aTTCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaa < 2:2163850‑M1/136‑74 (MQ=255) tCCCTATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtattacacacatgaggtgttaataatatatgtaatatttgttattattattaattatgctattttatttttctat < 1:1142183‑M1/136‑76 (MQ=255) tATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaatggagg > 2:1065054‑M1/1‑57 (MQ=255) tATTTCTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaatta < 1:1455946‑M1/136‑79 (MQ=255) cTATACAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatcct > 1:2008968‑M1/1‑52 (MQ=255) ataCAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGaaaa < 2:1798930/136‑1 (MQ=255) cAATTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaatttcttattaatacgt < 2:322674‑M1/136‑90 (MQ=255) aaTTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGAt > 2:415880/1‑136 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaatggaggtgtatgcgaca > 1:1092326‑M1/1‑46 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactc > 2:1119068‑M1/1‑47 (MQ=255) aaTTCAGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagatttcagcccaattaacgctgcactc < 1:893642‑M1/136‑90 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCttcgttgtggactagtcgtcaaactgtcgggggttcgggactgtacttagtcaggaaattagttggattttctccgttaaggttggtgaattgtt > 1:2102270‑M1/1‑41 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgcctttttaaccac > 2:662277‑M1/1‑41 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgcctttttaaccac > 2:547626‑M1/1‑41 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgcctttttaaccac > 2:1756187‑M1/1‑41 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctataataggcgttattccaatcggttatttcattggaatcacgagttaggggggagcgtcatgcggatacgtcgacc > 1:1832544‑M1/1‑41 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaact > 2:870480‑M1/1‑42 (MQ=255) aGAAATCTTTTATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaact > 2:2066924‑M1/1‑42 (MQ=255) aaTCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaatttcttattaatacgttgaaagac < 2:101196‑M1/135‑98 (MQ=255) aaTCTTTTATGCATTTACACAAGATATTTTACGCTCTCtgatttcatctggttgtatcagaatatgattgactaaatctttaatttcaacttcgcttaaattaacggctaatttcttattaatacgttgaaagac < 2:917479‑M1/135‑98 (MQ=255) aaTCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgcctttttaaccacgct < 2:758869‑M1/136‑99 (MQ=255) aaTCTTTTATGCATTTACACAAGATATTTTACGCTCTCaacttttctatctaatgatatatgttaaaagaatcgttaataaaataaatactcaaacgtaaccgttaattaatggaggtgtatgcgacatgaaaa < 1:1285515‑M1/134‑97 (MQ=255) tCTTTTATGCATTTACACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcaccctattttaataaaccagtttgatccgcctttttaaccacgctta < 1:924786‑M1/136‑101 (MQ=255) tCTTTTATGCATTTACACAAGATATTTTACGCTCTCacttaattgcgcactgcctataataggcgttattccaatcggttatttcattggaatcacgagttaggggggagcgtcatgcggatacgtcgaccggttc > 1:227910‑M1/1‑36 (MQ=255) tCTTTTATGCATTTAAACAAGATATTTTACGCTCTCtaaaaaacatctagcattcaagctttttcattttttaaattaaaatacgtgtcacccttttttaataaaccagtttgatccgcctttttaaccacgctta < 2:1654050‑M1/136‑101 (MQ=255) tttATGCATTTACACAAGATATTTTACGCTCTCCgggaggcagttgtggctaataaatatttttcattgttatttggtgcccagttctaccgtcgagattttagcccaattaacgctgcactcaactacggatac > 2:1890465‑M1/1‑34 (MQ=255) | TTTGGGCTAGTGCAGCGATAATTTCTGTGGTAAGTTCATTCATGGGGAATGCCTCCTGTGATGTTTTCTGTGGTTACTAAATATCATAAGGGAAGGCATTCCCTATTTCTATACAATTTAGAAATCTTTTGTGCGTTTACACAAGATATTTTACGCTCTCCACTAAAGGATCGGGTATCATCCGCAACGATAGTGGCGTAGTCTTGTAGATAAATCCAAGCGACTAAATCATACTTATCATGAAAATGATAGTAGAAAGCTTGTGGGG > TrimmedAssembly_T66_contig_1/88454‑88721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |